Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6346 cluster # 6346       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6346#0 length = 1827 sequences # 4  

consensusID : consensus_6346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1827
fasta sequence
                              [TTCCCCCATCTCCGCGGGAAACAAACCGGAGCTCGCCTTGGCCTCGCCGCCGGCCTCCTCCTCCTCCTCCATCGCCGCACGCTCTCCCTCCGAACCCTAACCCTAGCTCGCTCGCTCCGGGGTCCCGGGCCATGCTCTCCACGGCGGCGCCATCCTCAACCTCCCTCGTCGCCTCGTTCCCGTCACGCGCGCGCCGGCGGGGGCTCCCGGGCCGACGCGGCGTGGTCGTCGCGGCCGCGGGGGCGGGGCCGGGGGCGGGGGCGGCGGAGAGGTTCGCGGCAAGCAGCAGCTCCATCACCGACTACCTGCG-GTACCGCCGCCCGGGGTCCGCCGGGG-GAG-GTGGGGGAACCGGGGTGTGCGGCGGGGAGCTGCAGACGGCGGTG-GTGCG-GTACGAGAAGCGGCTCCCGTGGTCGCTCATCCACCCCTTCCTCCATGTTGATTTGGTTTCTACTGTCCACATTGCTGACAAAGAATACTTCGATAGACTCCAGCAAGCACTTCAAGATTATGATTGTGTTCTTTATGAAATGGTTACAAGTCGGGAGAACTTAA-ACAA-TCGCAAGGACCCAACCTTTGCGAAGAAGCTGAAATCTTCACGTAGGGGATTCAGTATTCTTGGCTTCATACAGAAGCAAATGGCAAACATCCTTTCATTGGATTACCAGCTAGATTGCCTTGACTATGGCAGTGAAAAATGGCAACATGCTGACCTTGATTTTGAGACATTCAAGCAGCTTCAGAGTGAAAGAGGTGAAAGTCTTTTCACGTTTGCGGTAGACATGACACTGAAATCAACTAAAGCCTTGGTACAACCAACATTGCCTGATGGTCTTGACTTCTGGAGGTCTAAGCTGCTTTGGGCCTCACGTGTTCTACCAATGCCTCTTGTTGGACTGTTCCTTATCAGTGGGCTTTGCTTACCAATCGACGATCAAGGTGGATATCCTGAGCTTGAAGCATTGTCCAGGCTAGATTTTGGAGCTGCACTGAAGATTTTTCTGGCTAAGCAATTGACCTCCGATTTCACATCTATGACCTCACCCATTGAGGAAAAGTCAGTTATCATTGGGGAAAGGAATAGAGTTGCTACTGAGAAGATACAGGAAGCAATAAACCATGGGTACAAGAGAATAGCTGTCCTTTATGGAGGTGGGCATATGCCGGACCTGGGAAGACGTCTTCGTGAAGAGCTCAATATGGTCCCAGCTGACGTCCAGTGGGTGACAGCATGGTCAATTAGAA-GCCGGGAGCTAGACAGGGAATCTCTTCCATTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACGAGACACTTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGCTTCTTGTGGGTACTGCCGTGAACTGGGCATCTTTGGCTGGCTCATGGATTGAACAATTTAATGGTCCATTTTGACATCTAATGGGCAGAAGCAAAAGAAAAAGGAAACAAACAAAGAAAGAAAAGAAATAAAACAAAACAAAACACTTAACAACAGAATTGGCAGTGGAAAATAGATCATGTCCTTGTTGTTTAAATTCCAGTTATTTCTGGAATACTGCAACACGTTTGTATATAACCATTTGTTGGATCAAACTGGAATGAGTTTAAATGAAAATTGTCAAGCTACATGATGCAAAAAAAACGCTGGATTTTGCATCTGGAATTTTGGTCAGCAGATATAGTTGGTATGAACTTATGGTATTTATTTATTATCATGTGGTACCCCCTGATAAGGAGCTGGGATATATTACAAGTAAGCCCTGATGTTACAAGCGCAATCTTCACA]

[+] EMBL AK105106             [TTCCCCCATCTCCGCGGGAAACAAACCGGAGCTCGCCTTGGCCTCGCCGCCGGCCTCCTCCTCCTCCTCCATCGCCGCACGCTCTCCCTCCGAACCCTAACCCTAGCTCGCTCGCTCCGGGGTCCCGGGCCATGCTCTCCACGGCGGCGCCATCCTCAACCTCCCTCGTCGCCTCGTTCCCGTCACGCGCGCGCCGGCGGGGGCTCCCGGGCCGACGCGGCGTGGTCGTCGCGGCCGCGGGGGCGGGGCCGGGGGCGGGGGCGGCGGAGAGGTTCGCGGCAAGCAGCAGCTCCATCACCGACTACCTGCG GTACCGCCGCCCGGGGTCCGCCGGGG GAG GTGGGGGAACCGGGGTGTGCGGCGGGGAGCTGCAGACGGCGGTG GTGCG GTACGAGAAGCGGCTCCCGTGGTCGCTCATCCACCCCTTCCTCCATGTTGATTTGGTTTCTACTGTCCACATTGCTGACAAAGAATACTTCGATAGACTCCAGCAAGCACTTCAAGATTATGATTGTGTTCTTTATGAAATGGTTACAAGTCGGGAGAACTTAA ACAA TCGCAAGGACCCAACCTTTGCGAAGAAGCTGAAATCTTCACGTAGGGGATTCAGTATTCTTGGCTTCATACAGAAGCAAATGGCAAACATCCTTTCATTGGATTACCAGCTAGATTGCCTTGACTATGGCAGTGAAAAATGGCAACATGCTGACCTTGATTTTGAGACATTCAAGCAGCTTCAGAGTGAAAGAGGTGAAAGTCTTTTCACGTTTGCGGTAGACATGACACTGAAATCAACTAAAGCCTTGGTACAACCAACATTGCCTGATGGTCTTGACTTCTGGAGGTCTAAGCTGCTTTGGGCCTCACGTGTTCTACCAATGCCTCTTGTTGGACTGTTCCTTATCAGTGGGCTTTGCTTACCAATCGACGATCAAGGTGGATATCCTGAGCTTGAAGCATTGTCCAGGCTAGATTTTGGAGCTGCACTGAAGATTTTTCTGGCTAAGCAATTGACCTCCGATTTCACATCTATGACCTCACCCATTGAGGAAAAGTCAGTTATCATTGGGGAAAGGAATAGAGTTGCTACTGAGAAGATACAGGAAGCAATAAACCATGGGTACAAGAGAATAGCTGTCCTTTATGGAGGTGGGCATATGCCGGACCTGGGAAGACGTCTTCGTGAAGAGCTCAATATGGTCCCAGCTGACGTCCAGTGGGTGACAGCATGGTCAATTAGAA GCCGGGAGCTAGACAGGGAATCTCTTCCATTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACGAGACACTTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGCTTCTTGTGGGTACTGCCGTGAACTGGGCATCTTTGGCTGGCTCATGGATTGAACAATTTAATGGTCCATTTTGACATCTAATGGGCAGAAGCGAAAGAAAAA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BU667241             [                                                                                                                                                                                                                                                                                  CGCGGC AGCAGCAGCTCCATCACCGACTACCTGCGTGTACCG CGCCCGGGGTCCGCCGGGGTGAGTGTGGGGGAACCGGGGTGTGCGGCGGGGAGCTGCAGACGGCGGTGTGTGCGTGTACGA AAGCGGCTCCCGTGGTCGCTCATCCACCCCTTCCTCCATGTTGATTTGGTTTCTACTGTCCACATTGCTGACAAAGAATACTTCGATAGACTCCAGCAAGCACTTCAAGATTATGATTGTGTTCTTTATGAAATGGTTACAAGTCGGGAGAACTTAACACAACTCGCAAGGACCCAACCTTTGCGAAGAAGCTGAAATCTTCACGTAGGGGATTCAGTATTCTTGGCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF325371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCGGACCTGGGAAGACGTCTTCGTGAAGAGCTCAATATGGTCCCAGCTGACGTCCAGTGGGTGACAGCATGGTCAATTAGAA GCCGGGAGCTAGACAGGGAATCTCTTCCATTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACGAGACACTTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGCTTCTTGTGGGTACTGCCGTGAACTGGGCATCTTTGGCTGGCTCATGGATTGAACAATTTAATGGTCCATTTTGACATCTAATGGGCAGAAGCAAAAGAAAAAGGAAACAAACAAAGAAAGAAAAGAAATAAAACAAAACAAAACACTTAACAACAGAATTGGCAGTGGAAAATAGATCATGTCCTTGTTGTTTAAATTCCAGTTATTTCTGGAATACTGCAACACGTTTGTATATAACCATTTGTTGGATCAAACTGGAATGAGTTTAAATGAAAATTGTCAAGCTACATGATGCAAAAAAAAC                                                                                                                                               ]
[-] EMBL CA762383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ggGAAGAGCTCAATATGTTCCCAGCTGACGTCCAGTGGGTGACAGCATGGTCAATTAAAAGGCCGGGAGCTAGACAGGGAATCTCTTCCACTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACGAGACACCTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGCTTCTTGTGGGTACTGCCGTGAACTGGGCATCTTTGGCTGGCTCATGGATTGAACAATTTAATGGTCCATTTTGACATCTAATGGGCAGAAGCAAAAGAAAAAGGAACCAACCAAAGAAAGAAAAGAAATAAACCAAACCAAAACACTTAACAACAGAATTGGCAGTGGAAAATAGATCATGTCCTTGTTGTTTAAATTCCAGTTATTTCTGGAATACTGCAACACGTTTGTATATAACCATTTGTTGGATCAAACTGGAATGAGTTTAAATGAAAATTGTCAGGCTACATGATGCAATATTTGTGCTGGATTTTGCATCTGGAATTTTGGTCAGCAGATATAGTTGGTATGAACTTATGGTATTTATTTATTATCATGTGGTACCCCCTGATAAGGAGCTGGGATATATTACAAGTAAGCCCTGATGTTACAAGCGCAATCTTCACA]


>consensus_6346#0 TTCCCCCATCTCCGCGGGAAACAAACCGGAGCTCGCCTTGGCCTCGCCGCCGGCCTCCTC CTCCTCCTCCATCGCCGCACGCTCTCCCTCCGAACCCTAACCCTAGCTCGCTCGCTCCGG GGTCCCGGGCCATGCTCTCCACGGCGGCGCCATCCTCAACCTCCCTCGTCGCCTCGTTCC CGTCACGCGCGCGCCGGCGGGGGCTCCCGGGCCGACGCGGCGTGGTCGTCGCGGCCGCGG GGGCGGGGCCGGGGGCGGGGGCGGCGGAGAGGTTCGCGGCAAGCAGCAGCTCCATCACCG ACTACCTGCGGTACCGCCGCCCGGGGTCCGCCGGGGGAGGTGGGGGAACCGGGGTGTGCG GCGGGGAGCTGCAGACGGCGGTGGTGCGGTACGAGAAGCGGCTCCCGTGGTCGCTCATCC ACCCCTTCCTCCATGTTGATTTGGTTTCTACTGTCCACATTGCTGACAAAGAATACTTCG ATAGACTCCAGCAAGCACTTCAAGATTATGATTGTGTTCTTTATGAAATGGTTACAAGTC GGGAGAACTTAAACAATCGCAAGGACCCAACCTTTGCGAAGAAGCTGAAATCTTCACGTA GGGGATTCAGTATTCTTGGCTTCATACAGAAGCAAATGGCAAACATCCTTTCATTGGATT ACCAGCTAGATTGCCTTGACTATGGCAGTGAAAAATGGCAACATGCTGACCTTGATTTTG AGACATTCAAGCAGCTTCAGAGTGAAAGAGGTGAAAGTCTTTTCACGTTTGCGGTAGACA TGACACTGAAATCAACTAAAGCCTTGGTACAACCAACATTGCCTGATGGTCTTGACTTCT GGAGGTCTAAGCTGCTTTGGGCCTCACGTGTTCTACCAATGCCTCTTGTTGGACTGTTCC TTATCAGTGGGCTTTGCTTACCAATCGACGATCAAGGTGGATATCCTGAGCTTGAAGCAT TGTCCAGGCTAGATTTTGGAGCTGCACTGAAGATTTTTCTGGCTAAGCAATTGACCTCCG ATTTCACATCTATGACCTCACCCATTGAGGAAAAGTCAGTTATCATTGGGGAAAGGAATA GAGTTGCTACTGAGAAGATACAGGAAGCAATAAACCATGGGTACAAGAGAATAGCTGTCC TTTATGGAGGTGGGCATATGCCGGACCTGGGAAGACGTCTTCGTGAAGAGCTCAATATGG TCCCAGCTGACGTCCAGTGGGTGACAGCATGGTCAATTAGAAGCCGGGAGCTAGACAGGG AATCTCTTCCATTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACG AGACACTTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGC TTCTTGTGGGTACTGCCGTGAACTGGGCATCTTTGGCTGGCTCATGGATTGAACAATTTA ATGGTCCATTTTGACATCTAATGGGCAGAAGCAAAAGAAAAAGGAAACAAACAAAGAAAG AAAAGAAATAAAACAAAACAAAACACTTAACAACAGAATTGGCAGTGGAAAATAGATCAT GTCCTTGTTGTTTAAATTCCAGTTATTTCTGGAATACTGCAACACGTTTGTATATAACCA TTTGTTGGATCAAACTGGAATGAGTTTAAATGAAAATTGTCAAGCTACATGATGCAAAAA AAACGCTGGATTTTGCATCTGGAATTTTGGTCAGCAGATATAGTTGGTATGAACTTATGG TATTTATTTATTATCATGTGGTACCCCCTGATAAGGAGCTGGGATATATTACAAGTAAGC CCTGATGTTACAAGCGCAATCTTCACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)