|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1040 fasta sequence
[TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCTCATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACTTCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAACAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTATTGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCACACCACCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCAGACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA]
[+] EMBL CB670565 [TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCTCATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACTTCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAACAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTATTGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAA ]
[-] EMBL C97530 [ tTTGGGATAGGCACATTGTG TCTATATAGTCATCCGAAGNTTCTTCTTCATCATCAGAAGATAGA TAGACGGCCCCATCCATGANTTGAANCCATCATTAATTCGCTTCTGCATCTCTGGGTTTACTTCTATTGTTATCTCCAGCATTTCTAGA CCACATTGTGGGGA TGTAATCACCCTCATCAA GATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCACACCACCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCAGACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA]
consensusID : consensus_6348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[TTTTTTTTTTTTTTTTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGA]
[+] EMBL CA760195 [TTTTTTTTTTTTTTTTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGA]
consensusID : consensus_6348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG]
[-] EMBL C97529 [TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6348#0 TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCT 60
consensus_6348#1 ------------------------------------------------------------
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 CATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACT 120
consensus_6348#1 ------------------------------------------------------------
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 TCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAA 180
consensus_6348#1 ------------------------------------------------------------
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 CAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATG 240
consensus_6348#1 ------------------------------------------------------------
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 GAAAGGCAAAGGATTGACAGGAAAGGG----------------------------TACAG 272
consensus_6348#1 ------------TTTTTTTTTTTTTTT----------------------------TACAG 20
consensus_6348#2 ----TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAG 56
** *****
consensus_6348#0 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 332
consensus_6348#1 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 80
consensus_6348#2 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 116
************************************************************
consensus_6348#0 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 392
consensus_6348#1 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 140
consensus_6348#2 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 176
************************************************************
consensus_6348#0 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 452
consensus_6348#1 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 200
consensus_6348#2 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 236
************************************************************
consensus_6348#0 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCAC 512
consensus_6348#1 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCAC 260
consensus_6348#2 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCAC 296
******************************************* ****************
consensus_6348#0 ATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 572
consensus_6348#1 ATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 320
consensus_6348#2 ATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 356
********************** *************************************
consensus_6348#0 CCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTAT 632
consensus_6348#1 CCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTAT 380
consensus_6348#2 CCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTAT 416
******************************** ***************************
consensus_6348#0 TGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 692
consensus_6348#1 TGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 440
consensus_6348#2 TGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 476
** * *******************************************************
consensus_6348#0 CACCG-CAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCC 751
consensus_6348#1 CACCG-CAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCC 499
consensus_6348#2 CACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG--------------------------- 509
***** ***************************
consensus_6348#0 ATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAA 811
consensus_6348#1 ATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAA 559
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 GCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTA 871
consensus_6348#1 GCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTA 619
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 TAGCCAAGCAACGCACACCACC-TCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAA 930
consensus_6348#1 TAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAA 679
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 ATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCA 990
consensus_6348#1 ATCAATGGA--------------------------------------------------- 688
consensus_6348#2 ------------------------------------------------------------
consensus_6348#0 GACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA 1040
consensus_6348#1 --------------------------------------------------
consensus_6348#2 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||