These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1079 fasta sequence [AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC-TTTTGATAGGACT-GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT-GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT--TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATGGACCTGAAAAAAAAAA] [+] EMBL AK067155 [AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGG CTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGAC ] [+] EMBL AK106065 [ CCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGG ] [+] EMBL BI806469 [ CTNCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTTGATAGGACTGGGACGAAGATTAGGACGT GTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTCGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCC ATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAAC ACACTNCNCNTTAGATAATGCTTCACCTAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTAC C ATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGAC ACTTTGATC AACATAC ATAAGTTC ATATATATTCATAGAGGCCTATGGACCTGAAAAAAAAAA] consensusID : consensus_6351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence [AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA] [+] EMBL AK060488 [AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6351#0 AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 60 consensus_6351#1 -AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 59 *********************************************************** consensus_6351#0 CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 120 consensus_6351#1 CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 119 ************************************************************ consensus_6351#0 CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 180 consensus_6351#1 CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 179 ************************************************************ consensus_6351#0 AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 240 consensus_6351#1 AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 239 ************************************************************ consensus_6351#0 GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 300 consensus_6351#1 GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 299 ************************************************************ consensus_6351#0 GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 360 consensus_6351#1 GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 359 ************************************************************ consensus_6351#0 TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 420 consensus_6351#1 TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 419 ************************************************************ consensus_6351#0 CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 480 consensus_6351#1 CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 479 ************************************************************ consensus_6351#0 TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 540 consensus_6351#1 TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 539 ************************************************************ consensus_6351#0 GTGAAGAAG-----------------TGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 583 consensus_6351#1 GTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 599 ********* ********************************** consensus_6351#0 ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 643 consensus_6351#1 ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 659 ************************************************************ consensus_6351#0 TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 703 consensus_6351#1 TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 719 ************************************************************ consensus_6351#0 TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 763 consensus_6351#1 TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 779 ************************************************************ consensus_6351#0 AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 823 consensus_6351#1 AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 839 ************************************************************ consensus_6351#0 AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 883 consensus_6351#1 AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 899 ************************************************************ consensus_6351#0 TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 943 consensus_6351#1 TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 959 ************************************************************ consensus_6351#0 AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1003 consensus_6351#1 AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1019 ************************************************************ consensus_6351#0 TGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATG 1063 consensus_6351#1 TGTAATGACAACTTTGA------------------------------------------- 1036 ***************** consensus_6351#0 GACCTGAAAAAAAAAA 1079 consensus_6351#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||