Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6351 cluster # 6351       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6351#0 length = 1079 sequences # 3  
consensus_6351#1 length = 1036 sequences # 1  

consensusID : consensus_6351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1079
fasta sequence
                              [AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC-TTTTGATAGGACT-GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT-GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT--TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATGGACCTGAAAAAAAAAA]

[+] EMBL AK067155             [AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGG CTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT  TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGAC                    ]
[+] EMBL AK106065             [                                  CCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT  TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGG                      ]
[+] EMBL BI806469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTNCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTTGATAGGACTGGGACGAAGATTAGGACGT GTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTCGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCC ATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAAC ACACTNCNCNTTAGATAATGCTTCACCTAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTAC C ATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGAC ACTTTGATC AACATAC ATAAGTTC ATATATATTCATAGAGGCCTATGGACCTGAAAAAAAAAA]


>consensus_6351#0 AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC GTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTT TTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGA GATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCAT ACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTG ATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATAT AATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACAC TTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGC AATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA TCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATGGACCTGAAAAAAAAAA



consensusID : consensus_6351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1036
fasta sequence
                              [AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA]

[+] EMBL AK060488             [AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA]


>consensus_6351#1 AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCC CACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCC GGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCA GAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCG CGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAG CAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGT ACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCC TCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTT AGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCG TGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTA TTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTAT GACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTT CTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCA ACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCA GCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCT CTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCA AGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATT GTAATGACAACTTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6351#0      AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 60
consensus_6351#1      -AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 59
                       ***********************************************************

consensus_6351#0      CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 120
consensus_6351#1      CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 119
                      ************************************************************

consensus_6351#0      CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 180
consensus_6351#1      CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 179
                      ************************************************************

consensus_6351#0      AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 240
consensus_6351#1      AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 239
                      ************************************************************

consensus_6351#0      GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 300
consensus_6351#1      GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 299
                      ************************************************************

consensus_6351#0      GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 360
consensus_6351#1      GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 359
                      ************************************************************

consensus_6351#0      TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 420
consensus_6351#1      TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 419
                      ************************************************************

consensus_6351#0      CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 480
consensus_6351#1      CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 479
                      ************************************************************

consensus_6351#0      TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 540
consensus_6351#1      TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 539
                      ************************************************************

consensus_6351#0      GTGAAGAAG-----------------TGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 583
consensus_6351#1      GTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 599
                      *********                 **********************************

consensus_6351#0      ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 643
consensus_6351#1      ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 659
                      ************************************************************

consensus_6351#0      TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 703
consensus_6351#1      TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 719
                      ************************************************************

consensus_6351#0      TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 763
consensus_6351#1      TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 779
                      ************************************************************

consensus_6351#0      AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 823
consensus_6351#1      AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 839
                      ************************************************************

consensus_6351#0      AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 883
consensus_6351#1      AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 899
                      ************************************************************

consensus_6351#0      TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 943
consensus_6351#1      TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 959
                      ************************************************************

consensus_6351#0      AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1003
consensus_6351#1      AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1019
                      ************************************************************

consensus_6351#0      TGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATG 1063
consensus_6351#1      TGTAATGACAACTTTGA------------------------------------------- 1036
                      *****************                                           

consensus_6351#0      GACCTGAAAAAAAAAA 1079
consensus_6351#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)