These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1368 fasta sequence [ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCTTCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGAGGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCGGATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTTAGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAACTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAAAATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGGATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTTTCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCAGAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA] [+] EMBL AK066033 [ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCTTCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGAGGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCGGATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTTAGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAACTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAAAATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGGATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTTTCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAAGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAA CACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAATTCACTTAGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACCTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCT ] [+] EMBL CA767035 [ AACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCAGAGTTCAGAAAGATGTGCGACCGTGATTG ] [-] EMBL CA761875 [ GACTGAAGTTTACTGCTAATACGATGGCCGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATGTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTGGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCCCAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCCCTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGTTTTGTTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGTTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTCCAGAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA] consensusID : consensus_6360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCAC] [+] EMBL BE040517 [ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6360#0 ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCT 60 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 TCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGA 120 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCG 180 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTT 240 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 AGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAA 300 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 CTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAA 360 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 AATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGG 420 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 ATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTT 480 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 TCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGC 540 consensus_6360#1 ----ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGC 56 ******************************************************** consensus_6360#0 TCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCA 600 consensus_6360#1 TCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCA 116 ************************************************************ consensus_6360#0 GAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGA 660 consensus_6360#1 GGTGGTTCCA--------TTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCA 168 * ***** ** * * * *** * * * * ***** *** * consensus_6360#0 CGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATA-CGATGGACGATCAAGTAATGAG 719 consensus_6360#1 GATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGG--ATAAT 226 * * ** * ** * * ****** * * * * * * ** * consensus_6360#0 GGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCT 779 consensus_6360#1 GCCCATCCAC-------------------------------------------------- 236 * * * consensus_6360#0 ACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGT 839 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCG 899 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 TAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATC 959 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 CATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCC 1019 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 ACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGAC 1079 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 ATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAA 1139 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 CTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAAT 1199 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGT 1259 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCA 1319 consensus_6360#1 ------------------------------------------------------------ consensus_6360#0 GAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA 1368 consensus_6360#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||