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Oryza sativa
cluster # 6367 cluster # 6367       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6367#0 length = 859 sequences # 3  
consensus_6367#1 length = 688 sequences # 1  

consensusID : consensus_6367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 859
fasta sequence
                              [ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA]

[+] EMBL CB681770             [ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGg                                                                                                  ]
[+] EMBL CF325918             [                                                                                                                                                                            AGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTC                                                                   ]
[-] EMBL CB681771             [                                                                                                                                                                                                                                                                                                                                                                                  CGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA]


>consensus_6367#0 ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCA ACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGA GGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGT CGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGC TCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCC GCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCT GCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGA GCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGT GTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGC ACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGA ATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTA CTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTT AATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTA GTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCT TCTTTGATACAAAAAAAGA



consensusID : consensus_6367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT]

[+] EMBL AK063627             [CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT]


>consensus_6367#1 CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT CCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAA CTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAAT TACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATG GATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAG AGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGC TGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTAT CTCTGAGAAGTAGTAGAAATACTCTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6367#0      --------------ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 46
consensus_6367#1      CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 60
                                    **********************************************

consensus_6367#0      ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 106
consensus_6367#1      ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 120
                      ************************************************************

consensus_6367#0      GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 166
consensus_6367#1      GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 180
                      ************************************************************

consensus_6367#0      GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 226
consensus_6367#1      GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 240
                      ************************************************************

consensus_6367#0      CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 286
consensus_6367#1      CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 300
                      ************************************************************

consensus_6367#0      CCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGA 346
consensus_6367#1      CCAG-------------------------------------------------------- 304
                      ****                                                        

consensus_6367#0      CGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCG 406
consensus_6367#1      ------------------------------------------------------------
                                                                                  

consensus_6367#0      GCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 466
consensus_6367#1      ------CCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 358
                            ******************************************************

consensus_6367#0      AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 526
consensus_6367#1      AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 418
                      ************************************************************

consensus_6367#0      ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 586
consensus_6367#1      ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 478
                      ************************************************************

consensus_6367#0      TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 646
consensus_6367#1      TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 538
                      ************************************************************

consensus_6367#0      AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 706
consensus_6367#1      AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 598
                      ************************************************************

consensus_6367#0      GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 766
consensus_6367#1      GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 658
                      ************************************************************

consensus_6367#0      ATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTC 826
consensus_6367#1      ATCTCTGAGAAGTAGTAGAAATACTCTTGT------------------------------ 688
                      ******************************                              

consensus_6367#0      TTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA 859
consensus_6367#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)