These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 859 fasta sequence [ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA] [+] EMBL CB681770 [ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGg ] [+] EMBL CF325918 [ AGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTC ] [-] EMBL CB681771 [ CGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA] consensusID : consensus_6367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT] [+] EMBL AK063627 [CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6367#0 --------------ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 46 consensus_6367#1 CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 60 ********************************************** consensus_6367#0 ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 106 consensus_6367#1 ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 120 ************************************************************ consensus_6367#0 GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 166 consensus_6367#1 GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 180 ************************************************************ consensus_6367#0 GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 226 consensus_6367#1 GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 240 ************************************************************ consensus_6367#0 CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 286 consensus_6367#1 CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 300 ************************************************************ consensus_6367#0 CCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGA 346 consensus_6367#1 CCAG-------------------------------------------------------- 304 **** consensus_6367#0 CGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCG 406 consensus_6367#1 ------------------------------------------------------------ consensus_6367#0 GCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 466 consensus_6367#1 ------CCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 358 ****************************************************** consensus_6367#0 AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 526 consensus_6367#1 AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 418 ************************************************************ consensus_6367#0 ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 586 consensus_6367#1 ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 478 ************************************************************ consensus_6367#0 TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 646 consensus_6367#1 TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 538 ************************************************************ consensus_6367#0 AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 706 consensus_6367#1 AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 598 ************************************************************ consensus_6367#0 GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 766 consensus_6367#1 GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 658 ************************************************************ consensus_6367#0 ATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTC 826 consensus_6367#1 ATCTCTGAGAAGTAGTAGAAATACTCTTGT------------------------------ 688 ****************************** consensus_6367#0 TTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA 859 consensus_6367#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||