These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1439 fasta sequence [TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATCACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTGTCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAGAAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAACAGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCAGGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTCTCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGGCCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGTTACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGGTTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCTAGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGTTGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT] [+] EMBL CB643917 [TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATCACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTGTCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAGAAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAACAGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCAGGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTCTCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGGCCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGTTACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGGTTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCTAGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATC ] [-] EMBL CB643916 [ TGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTATAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGTTGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT] [-] EMBL AK058707 [ TTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCG ] consensusID : consensus_6377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [TTTTTTTTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCG] [-] EMBL CF326251 [TTTTTTTTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6377#0 TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATC 60 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 ACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTG 120 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAG 180 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 AAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAAC 240 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 AGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCA 300 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 GGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTC 360 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGG 420 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 CCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGT 480 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGG 540 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCT 600 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 AGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGT 660 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 AGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGG 720 consensus_6377#1 ----------------------------TTTTTTTTCTTATGCTTTCAATTAAAGCTGGG 32 * ************************* consensus_6377#0 TGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAG 780 consensus_6377#1 TGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAG 92 ************************************************************ consensus_6377#0 ATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTG 840 consensus_6377#1 ATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTG 152 ************************************************************ consensus_6377#0 ATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAG 900 consensus_6377#1 ATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAG 212 ************************************************************ consensus_6377#0 GCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAG 960 consensus_6377#1 GCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAG 272 ************************************************************ consensus_6377#0 CAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAA 1020 consensus_6377#1 CAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAA 332 ************************************************************ consensus_6377#0 CCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGC 1080 consensus_6377#1 CCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGC 392 ************************************************************ consensus_6377#0 CCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCG 1140 consensus_6377#1 CCAGACAGCGGCGGCTGCTGCGGCTGCCGCG------------TCGCCTTCGCGTCCTCA 440 ************************ ** * * ***** ** ***** consensus_6377#0 GCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGG 1200 consensus_6377#1 CCGTCCCCG--------------------------------------------------- 449 ** * ** consensus_6377#0 AGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGAT 1260 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 CCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGC 1320 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGT 1380 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT 1439 consensus_6377#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||