These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA] [+] EMBL BI813693 [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA] consensusID : consensus_638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC] [+] EMBL CA758286 [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_638#0 ----------------------------------ACATCAGATATGTTCAGG-ATCTAA- 24 consensus_638#1 TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAA 60 ****************** ****** consensus_638#0 TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGG-CAAACTGATGCTTTGGGC 83 consensus_638#1 TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGC 120 ***************************************** ****************** consensus_638#0 TATCCTTATGTTTTGTG-CTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 142 consensus_638#1 TATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 180 ***************** ****************************************** consensus_638#0 CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 202 consensus_638#1 CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 240 ************************************************************ consensus_638#0 CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 262 consensus_638#1 CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 300 ************************************************************ consensus_638#0 AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 322 consensus_638#1 AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 360 ************************************************************ consensus_638#0 GTGTCAAATTTTGGCAA-GTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGG 381 consensus_638#1 GTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGG------- 413 ***************** *********************** ****** * * consensus_638#0 ATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAA 441 consensus_638#1 ----------AAAAACCACAATTCCTGCCGAGGATGATCT--TTTACCAAAC-------- 453 ** **** * *** *** ** *** * * consensus_638#0 ATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCC 501 consensus_638#1 ------------------------------------------------------------ consensus_638#0 TAATTTAGGTCTCAAAAAAA 521 consensus_638#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||