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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 638 cluster # 638       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_638#0 length = 521 sequences # 1  
consensus_638#1 length = 453 sequences # 1  

consensusID : consensus_638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence
                              [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA]

[+] EMBL BI813693             [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA]


>consensus_638#0 ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAAT GAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGA TTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAA TTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTT TTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATA TAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTG GTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCC TATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAA ATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA



consensusID : consensus_638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC]

[+] EMBL CA758286             [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC]


>consensus_638#1 TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAA TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGC TATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA GTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACC ACAATTCCTGCCGAGGATGATCTTTTACCAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_638#0      ----------------------------------ACATCAGATATGTTCAGG-ATCTAA- 24
consensus_638#1      TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAA 60
                                                       ****************** ****** 

consensus_638#0      TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGG-CAAACTGATGCTTTGGGC 83
consensus_638#1      TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGC 120
                     ***************************************** ******************

consensus_638#0      TATCCTTATGTTTTGTG-CTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 142
consensus_638#1      TATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 180
                     ***************** ******************************************

consensus_638#0      CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 202
consensus_638#1      CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 240
                     ************************************************************

consensus_638#0      CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 262
consensus_638#1      CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 300
                     ************************************************************

consensus_638#0      AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 322
consensus_638#1      AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 360
                     ************************************************************

consensus_638#0      GTGTCAAATTTTGGCAA-GTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGG 381
consensus_638#1      GTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGG------- 413
                     ***************** ***********************  ****** * *       

consensus_638#0      ATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAA 441
consensus_638#1      ----------AAAAACCACAATTCCTGCCGAGGATGATCT--TTTACCAAAC-------- 453
                               ** ****  * ***         ***  **  ***   * *         

consensus_638#0      ATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCC 501
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      TAATTTAGGTCTCAAAAAAA 521
consensus_638#1      --------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)