cluster # 638

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Oryza sativa
cluster # 638 cluster # 638 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_638#0 length = 521 sequences # 1

consensus_638#1 length = 453 sequences # 1

consensusID : consensus_638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA]

[+] EMBL BI813693             [ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA]




>consensus_638#0
ACATCAGATATGTTCAGGATCTAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAAT
GAGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGCTGCTATGGATGGGAGCGGA
TTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAA
TTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTT
TTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATA
TAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAGTTTTGGCATGACTAATTTTG
GTAAGGCAAAGTTGTGTTTGGATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCC
TATTTTCTTAGATATGCCAAAATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAA
ATTGCAAAATATTGGTAAGCCTAATTTAGGTCTCAAAAAAA

consensusID : consensus_638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC]

[+] EMBL CA758286             [TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGGCAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACACGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTCAATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCAGTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACCACAATTCCTGCCGAGGATGATCTTTTACCAAAC]




>consensus_638#1
TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAA
TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGC
TATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG
CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA
CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC
AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA
GTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGGAAAAACC
ACAATTCCTGCCGAGGATGATCTTTTACCAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_638#0      ----------------------------------ACATCAGATATGTTCAGG-ATCTAA- 24
consensus_638#1      TCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAA 60
                                                       ****************** ****** 

consensus_638#0      TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGG-CAAACTGATGCTTTGGGC 83
consensus_638#1      TGACTACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGC 120
                     ***************************************** ******************

consensus_638#0      TATCCTTATGTTTTGTG-CTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 142
consensus_638#1      TATCCTTATGTTTTGTGGCTGCTATGGATGGGAGCGGATTTTGCGATGGGCGTTCCCAGG 180
                     ***************** ******************************************

consensus_638#0      CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 202
consensus_638#1      CAAGATGCCAGCATGGGAGAAGCGTCAGAAACAGGCAATTGCAAATCTGGAGAAAAAACA 240
                     ************************************************************

consensus_638#0      CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 262
consensus_638#1      CGAATAGGATCTTGTTTTTTTTTCCTTCACTTCAATTTTTTGCTCCACTGGCATAGTTTC 300
                     ************************************************************

consensus_638#0      AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 322
consensus_638#1      AATCTAATATGTAGGGTTGGTTTGGTTTGTGGCCTATATAGGCCTTACCAAATTTTGTCA 360
                     ************************************************************

consensus_638#0      GTGTCAAATTTTGGCAA-GTTTTGGCATGACTAATTTTGGTAAGGCAAAGTTGTGTTTGG 381
consensus_638#1      GTGTCAAATTTTGGCAAAGTTTTGGCATGACTAATTTTGGTGGGGCAAAATGG------- 413
                     ***************** ***********************  ****** * *       

consensus_638#0      ATTGAAGCCAAATAACCTAAGTTCACTATTGAAATGGCCTATTTTCTTAGATATGCCAAA 441
consensus_638#1      ----------AAAAACCACAATTCCTGCCGAGGATGATCT--TTTACCAAAC-------- 453
                               ** ****  * ***         ***  **  ***   * *         

consensus_638#0      ATTTGGCTTCAAACCAAATAGATACTAAACACTATTGAAATTGCAAAATATTGGTAAGCC 501
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      TAATTTAGGTCTCAAAAAAA 521
consensus_638#1      --------------------