These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence [TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAATCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTCGATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACACTTCTGCAACAAGCTTTA-NTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCG-CCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAG-TCCAGT-CCTCCT-CCCAG-TTCCGGCGGCG-GGGGNCAA-CAAGCGTCGACGACGAAGCTGCTGAAGGAGACTGGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGACCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTCATCTCTTCTCATCTGTTCTTCCTCCTCGATGATCGATCGATCTCGTGTTATTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATATACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTCAGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGCTGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTAGCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGATGCAGTA] [+] EMBL C73165 [TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAATCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTCGATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACACTTCTGCAACAAGCTTTA NTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCG CCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAG TCCAGT CCTCCT CCCAG TTCCGGCGGCG GGGGNCAA CAAGCGTCGACGACGAAGCTGCTGAAGGAGACTG ] [+] EMBL AK071601 [ CCTCACACTTCTGCAACAAGCTTTAGCTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCGCCCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGTCCCTCCTCCCCAGCTCCCGCCGCCGCGGCGCCAACCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGACCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTCATCTCTTCTCATCTGTTCTTCCTCCTCGATGATCGATCGATCTCGTGTTATTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATATACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTCAGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGCTGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTAGCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGATGCAGTA] consensusID : consensus_6389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCCCGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAGGCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGATCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCCCTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAATTCATTATTCGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGCTAAGTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCATATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGTTCTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTTGTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCATGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAAAAAAAAAA] [-] EMBL CA760806 [CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCCCGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAGGCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGATCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCCCTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAATTCATTATTCGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGCTAAGTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCATATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGTTCTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTTGTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCATGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAAAAAAAAAA] consensusID : consensus_6389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CCGACGAGGAGATCAACGAGCTCATCTCCAAGCTTCAGGCCCTCCTCCCGGAGTCCTCCCGCAGCCGCGGCGCAAGCCGGTCGTCGGCGTCGAAGCTGCTCAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGAGCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTCCTCCGGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGACGATTGATGGAGGACGAGCTTGCTAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCTCTTCTTTGTTTCTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG] [+] EMBL CB683392 [CCGACGAGGAGATCAACGAGCTCATCTCCAAGCTTCAGGCCCTCCTCCCGGAGTCCTCCCGCAGCCGCGGCGCAAGCCGGTCGTCGGCGTCGAAGCTGCTCAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGAGCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTCCTCCGGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGACGATTGATGGAGGACGAGCTTGCTAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCTCTTCTTTGTTTCTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6389#0 TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAA 60 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 ------------------------------------------------------------ consensus_6389#0 TCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTC 120 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 ------------------------------------------------------------ consensus_6389#0 GATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACAC 180 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 ------------------------------------------------------------ consensus_6389#0 TTCTGCAACAAGCTTTANTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTA 240 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 --------CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCC 52 consensus_6389#0 GCCGCATTCGCCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTG 300 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 CGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAG 112 consensus_6389#0 TCGGAGGAGGAGATCAA--CGAGCTCATCTCCAAG--TCCAGTCCTCC-----TCCCAG- 350 consensus_6389#2 -CCGACGAGGAGATCAA--CGAGCTCATCTCCAAGCTTCAGGCCCTCC-----TCCCGGA 52 consensus_6389#1 GCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGA 172 * * * ***** * * **** * ** ** * * * * consensus_6389#0 ----TTCCGGCGGCGGGGG-NCAA--CAAGC-GTCGA-CGACGAAGCTGCTGAAGGAGAC 401 consensus_6389#2 GTCCTCCCGCAGCCGCGGC-GCAAGCCGGTC-GTCGG-CGTCGAAGCTGCTCAAGGAGAC 109 consensus_6389#1 TCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCC 232 * ** * * * * *** ** ** ** * consensus_6389#0 TGGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGA 461 consensus_6389#2 GTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGA 169 consensus_6389#1 CTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAAT--TCATT 290 *** ** *** ** ** * *** * ** consensus_6389#0 CCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTC-CTCC 520 consensus_6389#2 GCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTC-CTCC 228 consensus_6389#1 ATTCGTAGTAGCCA-GCTTGATCTCATCTCTCCTCATGAG-CCATATGACATGTGGCTAA 348 ** * * * * ** * * *** *** * * ** consensus_6389#0 GCTAGCTCATCTCTTCTC-ATCTGTT-CTTCCTCCTCGATGATCGATCGATCTCGTGTTA 578 consensus_6389#2 GGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGA-CGATTGATGGAGGACGA 287 consensus_6389#1 GTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCAT 408 * * *** * * * * * *** consensus_6389#0 TTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATAT 638 consensus_6389#2 GCTTGC-TAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCT-CTTCTTTGTTT 345 consensus_6389#1 ATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGT-T 467 * ** * * * * * * * * * * * consensus_6389#0 ACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTC 698 consensus_6389#2 CTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG--------------------------- 378 consensus_6389#1 CTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTT 527 * * * consensus_6389#0 AGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGC 758 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 GTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCA 587 consensus_6389#0 TGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTA 818 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 TGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAA 647 consensus_6389#0 GCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAG 878 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 AAAAAAAA---------------------------------------------------- 655 consensus_6389#0 CTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGAT 938 consensus_6389#2 ------------------------------------------------------------ consensus_6389#1 ------------------------------------------------------------ consensus_6389#0 GCAGTA 944 consensus_6389#2 ------ consensus_6389#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||