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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence
[TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAATCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTCGATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACACTTCTGCAACAAGCTTTA-NTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCG-CCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAG-TCCAGT-CCTCCT-CCCAG-TTCCGGCGGCG-GGGGNCAA-CAAGCGTCGACGACGAAGCTGCTGAAGGAGACTGGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGACCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTCATCTCTTCTCATCTGTTCTTCCTCCTCGATGATCGATCGATCTCGTGTTATTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATATACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTCAGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGCTGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTAGCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGATGCAGTA]
[+] EMBL C73165 [TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAATCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTCGATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACACTTCTGCAACAAGCTTTA NTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCG CCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAG TCCAGT CCTCCT CCCAG TTCCGGCGGCG GGGGNCAA CAAGCGTCGACGACGAAGCTGCTGAAGGAGACTG ]
[+] EMBL AK071601 [ CCTCACACTTCTGCAACAAGCTTTAGCTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTAGCCGCATTCGCCCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGTCCCTCCTCCCCAGCTCCCGCCGCCGCGGCGCCAACCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGACCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTCATCTCTTCTCATCTGTTCTTCCTCCTCGATGATCGATCGATCTCGTGTTATTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATATACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTCAGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGCTGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTAGCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGATGCAGTA]
consensusID : consensus_6389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCCCGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAGGCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGATCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCCCTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAATTCATTATTCGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGCTAAGTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCATATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGTTCTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTTGTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCATGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAAAAAAAAAA]
[-] EMBL CA760806 [CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCCCGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAGGCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGATCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCCCTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAATTCATTATTCGTAGTAGCCAGCTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGCTAAGTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCATATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGTTCTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTTGTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCATGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAAAAAAAAAA]
consensusID : consensus_6389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[CCGACGAGGAGATCAACGAGCTCATCTCCAAGCTTCAGGCCCTCCTCCCGGAGTCCTCCCGCAGCCGCGGCGCAAGCCGGTCGTCGGCGTCGAAGCTGCTCAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGAGCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTCCTCCGGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGACGATTGATGGAGGACGAGCTTGCTAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCTCTTCTTTGTTTCTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG]
[+] EMBL CB683392 [CCGACGAGGAGATCAACGAGCTCATCTCCAAGCTTCAGGCCCTCCTCCCGGAGTCCTCCCGCAGCCGCGGCGCAAGCCGGTCGTCGGCGTCGAAGCTGCTCAAGGAGACGTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGAGCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTCCTCCGGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGACGATTGATGGAGGACGAGCTTGCTAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCTCTTCTTTGTTTCTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6389#0 TTTTTCTTAGCTAGCTCGATCTCGCCTCGCCTCCTCCGGGCCTCCAGCGAAAGTAATCAA 60
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 ------------------------------------------------------------
consensus_6389#0 TCAGATTCAGATCGATCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCTCCCATACATGTC 120
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 ------------------------------------------------------------
consensus_6389#0 GATCTCTCACTATAAATAACCTGCCCCCTCTCCCTTTCTGCTTCAATTCCTACCTCACAC 180
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 ------------------------------------------------------------
consensus_6389#0 TTCTGCAACAAGCTTTANTCCAGCCACCGGAACGAGAGATCGATACAGCTCGATCAGCTA 240
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 --------CCGACCCATCCCGGGCCTCTTCCCGCACTACCCGGTACCATGAACCCAGCCC 52
consensus_6389#0 GCCGCATTCGCCTCGCCGCCGCCGACGATGTCGAGCCGGAGGTCGTCGCGCTCCTCCGTG 300
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 CGCCCCCGGTACCTCCCCCCAAATATCCCCCTAGGTAACCAGGCTCCCAGTCCTGCATAG 112
consensus_6389#0 TCGGAGGAGGAGATCAA--CGAGCTCATCTCCAAG--TCCAGTCCTCC-----TCCCAG- 350
consensus_6389#2 -CCGACGAGGAGATCAA--CGAGCTCATCTCCAAGCTTCAGGCCCTCC-----TCCCGGA 52
consensus_6389#1 GCATACGCATAGATCTGGTCTACCTCAGTACAAAATCTCCTCATCCGCGGGCACTCTGGA 172
* * * ***** * * **** * ** ** * * * *
consensus_6389#0 ----TTCCGGCGGCGGGGG-NCAA--CAAGC-GTCGA-CGACGAAGCTGCTGAAGGAGAC 401
consensus_6389#2 GTCCTCCCGCAGCCGCGGC-GCAAGCCGGTC-GTCGG-CGTCGAAGCTGCTCAAGGAGAC 109
consensus_6389#1 TCATCCTCATGATTAAGGCAGCCACCCGGCCTATCGATCGGTCCTACTACTCCTCCTTCC 232
* ** * * * * *** ** ** ** *
consensus_6389#0 TGGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTCAGCGACAGGCTCTCCGA 461
consensus_6389#2 GTGCAGCTACATCAAGAGCCTGCACCGGGAGGTGGACGACCTGTCCGACCGGCTGTCGGA 169
consensus_6389#1 CTTCAGTAGGGGCATAAGCTAGCTAGCTAGGGCCGCGCCCCTAATTAAGTAAT--TCATT 290
*** ** *** ** ** * *** * **
consensus_6389#0 CCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTC-CTCC 520
consensus_6389#2 GCTCATGTCGACGATGGACAACAACAGCCCGCAGGCCGAGATCATCCGGAGCCTC-CTCC 228
consensus_6389#1 ATTCGTAGTAGCCA-GCTTGATCTCATCTCTCCTCATGAG-CCATATGACATGTGGCTAA 348
** * * * * ** * * *** *** * * **
consensus_6389#0 GCTAGCTCATCTCTTCTC-ATCTGTT-CTTCCTCCTCGATGATCGATCGATCTCGTGTTA 578
consensus_6389#2 GGTGATCGATCCTAGCTCTATCAGTAGCTGCAGCGACGACGA-CGATTGATGGAGGACGA 287
consensus_6389#1 GTTAATTAATCCTTGATGCAGTAGAGTCGTACCAGATGTTTCATCGATGATAGTCGTCAT 408
* * *** * * * * * ***
consensus_6389#0 TTCTACGTACATGAAGGATGATATGAATGCAGCTCGTGCCCTGTAGCTACGTATAAATAT 638
consensus_6389#2 GCTTGC-TAGCTAGCGATTGAGGAGGGAGACGACAAGATTTTATTGCT-CTTCTTTGTTT 345
consensus_6389#1 ATGTGTGTATCTCTTGATCTAGCTTTGCTGATCTCCTCTTGTTTCATTTCCTCTTTGT-T 467
* ** * * * * * * * * * * *
consensus_6389#0 ACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTAGCTC 698
consensus_6389#2 CTTTCTTCGATCTCTCCTGAAAAGGGAAAAGTG--------------------------- 378
consensus_6389#1 CTGTTCATGTGTTTTTCTGTGAGCTTAATTATTGTTGTTTTGGCGGTTTTGGATCAAGTT 527
* * *
consensus_6389#0 AGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGC 758
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 GTTTTCCTCCAGACAACCGACCGACCGCTAGCTACCCATCGATACACCGCCATCAGCGCA 587
consensus_6389#0 TGGCTTGATGATCGGTACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTA 818
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 TGTACTACTGTGTCTGAAACTCTGAATCAATCTAATCAAATTTTTGTGCTGCGTAAAAAA 647
consensus_6389#0 GCTAGCTAGGGCCGGCTGCCTAATTAAGTAATTAAGTAATTTATTATTTGTAGTAGCCAG 878
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 AAAAAAAA---------------------------------------------------- 655
consensus_6389#0 CTTGATCTCATCTCTCCTCATGAGCCATATGACATGTGGTTAAGTTAATTAATCCTTGAT 938
consensus_6389#2 ------------------------------------------------------------
consensus_6389#1 ------------------------------------------------------------
consensus_6389#0 GCAGTA 944
consensus_6389#2 ------
consensus_6389#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||