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Oryza sativa
cluster # 6391 cluster # 6391       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6391#0 length = 844 sequences # 3  
consensus_6391#1 length = 788 sequences # 1  

consensusID : consensus_6391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence
                              [GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT-GGTAGCATT-CGCACGTTTCT-GAGCCGCAAT-GGAATTGAAT-GCAGTGACCTT-GAAGAATTATT-CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC]

[+] EMBL CB619553             [GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT GGTAGCATT CGCACGTTTCT GAGCCGCAAT GGAATTGAAT GCAGTGACCTT GAAGAATTATT CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC]
[+] EMBL C73103               [                                            ACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGGTAGCATTCCGCACGTTTCTGGAGCCGCAATGGGAATTGAATGGCAGTGACCTTGGAAG ATTATTCCATC AAGATCAATCACTGGGCCACG GAATGTGGGCAAGATAGTTGGC ATGCNGGTAGTTATC CCCTAAGC                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS4571A             [                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAA NCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAGGCCTTGCAAGGGGAT                                                                                  ]


>consensus_6391#0 GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAA GGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGA CCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGC AATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGA AACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAA ATCCAATGTTGGTAGCATTCGCACGTTTCTGAGCCGCAATGGAATTGAATGCAGTGACCT TGAAGAATTATTCATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGG CTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACT TGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGA TAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAG GCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGC CTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGA ATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCC TGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCAT TAAC



consensusID : consensus_6391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 788
fasta sequence
                              [AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT]

[-] EMBL CB097072             [AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT]


>consensus_6391#1 AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGG TGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACG CTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATC AGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTT ATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCC GAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACA GGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCA AGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTG ACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAG ATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATA TTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAG CAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGC ATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACAC TTTGCTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6391#0      --------GCTTCCATCTGGTGT-GCTTATTATAGGATCTCACACTCAAATGGACAGCCG 51
consensus_6391#1      AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGG 60
                               * *  ***   ***    *    **  *  * *  ** *  **  *    *

consensus_6391#0      CAAA-GAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGA 110
consensus_6391#1      TGTCTGTGTAGGCCCNCCCAGNTGA--TTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGA 118
                           * * ****** ***** **   **  *****************************

consensus_6391#0      CGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAA 170
consensus_6391#1      CGCTATTTGACCTTTTCCCGG----TANCANTTTTCATTCTTATTG--GTCACAATGTTC 172
                      *********************    *     *  **  *   **    *  **** *   

consensus_6391#0      GTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTC 230
consensus_6391#1      TTTCTAT--CAGTG---CTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTAT 227
                       * * *   ** **   * * *****  *** *       **   **  ***  ****  

consensus_6391#0      CACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGG--ATCGTGACGT-TGAAA 287
consensus_6391#1      CT---GATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAA 284
                      *    **** *   ***     * * ** * *  *    ***   *** *  *  *****

consensus_6391#0      CCCTTAAAGCTAAATCCAATGTTGGT--AGCATTCGCACGTTTCTGAGCCGCAATGGAAT 345
consensus_6391#1      GGAACAAAGA-AAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATT 343
                           ****  ** *** * *    *  * ***    *      *   **  *    * *

consensus_6391#0      TGAATGCAGTGACCTTGAAGAATTATTCATCAAAGATCAATCACTGACCAACGAAAATGT 405
consensus_6391#1      TCGATCCAACTTCCACAGGTGCTAAT--ATCCCTTGTTATC--TTGTTCAA--GTATTAT 397
                      *  ** **    **        * **  ***     * *     **  ***    * * *

consensus_6391#0      GGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTC 465
consensus_6391#1      GCTCAAGTATATTATCTAATCCA--AGCAACTGAATTT-GCAGGATGAAACATTACTCAC 454
                      *  ****    **  ***  *    **  *     **  ***  ** **       ** *

consensus_6391#0      CAA--GGATGGTAAACTTGTATTGGCGAGC-GAAAGCCTTAAGCATGGGCTCAACATGCT 522
consensus_6391#1      AGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGT-TG 513
                        *  *** *  * *  ** ** *    *  **** ******   *     ***  *   

consensus_6391#0      GCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATG-TTGTCACAG 581
consensus_6391#1      GTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTT 573
                      * ** **  ***  ** *       ** * * * ** *      *  *** *** ***  

consensus_6391#0      AGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCA 641
consensus_6391#1      TGGGT---TTTGAACCATGTATTCTG--------TATATT-CCTCTTGAAACTGAAATTT 621
                       *      *****   * *  *****        ****   ***  *** * ** * *  

consensus_6391#0      CCTTTG-ATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATG 700
consensus_6391#1      CTTGTGTGCGATGCCT-AGCCTAGACAGCT-------AGACCCTAAG-----CAGTGTTT 668
                      * * **   ***     ***** *  *  *       * **  * *        *** * 

consensus_6391#0      CTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCT-TGCAAGGG 759
consensus_6391#1      TGTTTTAAACGACACTTTGCTCTTTTCCCCTCAA-ATGATCAATCATGCATGCATAAAGG 727
                        *  *   * *     **   * ***  *  *  *     **  * ** *    ** **

consensus_6391#0      AATATTGCTGTTTGGACCTCCTGGTACTGGGAAA-ACCATGCTTGCTAAGGCAGTAGCAA 818
consensus_6391#1      TGTGC-GATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCT 786
                        *   * **  * ***  *  *   **  * *      ** **   * * ** *     

consensus_6391#0      CTGAAGCAGGTGCTAACTTCATTAAC 844
consensus_6391#1      CT------------------------ 788
                      **                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)