cluster # 641

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 641 cluster # 641 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_641#0 length = 511 sequences # 1

consensus_641#1 length = 482 sequences # 1

consensusID : consensus_641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGGGGAGGCTGCCATTCTTGATCCCCTTGAGGTTGAGCTCCTTCATATCCGCCTCGATCTTGGTCCCGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCCCGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG]

[+] EMBL CB667143             [TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGGGGAGGCTGCCATTCTTGATCCCCTTGAGGTTGAGCTCCTTCATATCCGCCTCGATCTTGGTCCCGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCCCGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG]




>consensus_641#0
TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAG
CTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTA
ATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCG
CGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCC
GTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGC
GAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGG
GGAGGCTGCCATTCTTGATCCCCTTGAGGTTGAGCTCCTTCATATCCGCCTCGATCTTGG
TCCCGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCCCGGAACCGG
CGAGGTACTTCTCTAGGCCGAAGAATTCCTG

consensusID : consensus_641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGCGGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCTGTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGCTGCGAGCGCAGGTGCGTCGGCGACCTCCTCCTCTG]

[+] EMBL CB667181             [CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGCGGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCTGTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGCTGCGAGCGCAGGTGCGTCGGCGACCTCCTCCTCTG]




>consensus_641#1
CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAGCTTAAGTAAGGTATAACATGG
ATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACG
GCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCA
AAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGC
CGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTC
GAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGCGGCGGCTTCCGCTGCCGGCCC
ATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCTGTGTGCGGCGAACGACGCCGC
CAAGGACGACCGGTGCTGCTCCGTGGCTGCGAGCGCAGGTGCGTCGGCGACCTCCTCCTC
TG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_641#0      TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAG 60
consensus_641#1      ---------------------CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAG 39
                                          ************************  *************

consensus_641#0      CTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTA 120
consensus_641#1      CTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTA 99
                     ************************************************************

consensus_641#0      ATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCG 180
consensus_641#1      ATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCG 159
                     ************************************************************

consensus_641#0      CGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCC 240
consensus_641#1      CGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCC 219
                     ************************************************************

consensus_641#0      GTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGC 300
consensus_641#1      GTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGC 279
                     ************************************************************

consensus_641#0      GAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGG 360
consensus_641#1      GAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGC 339
                     ********************* ******************************* **  * 

consensus_641#0      GGAGGCTGCCATTCTTGATCCCCTTGAGG-TTGAGCTCCTTCATATC-CGCCTCGATCTT 418
consensus_641#1      GGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCT 399
                     ** **** **  *   *  **    ****   * **  *  *  *   ** *  ***  *

consensus_641#0      G-GTCC------CGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCC 471
consensus_641#1      GTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGC-TGCGAGCGCAG 458
                     * ** *      *** ****    **  **   * *   * *** **  ***  ** *  

consensus_641#0      CGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG 511
consensus_641#1      GTGCGTCGGCGACCTCCTCCTCTG---------------- 482
                       *   ******  * ** ****