These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 780 fasta sequence [TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACGCTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTATGGCATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGGGGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTGGCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAATTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGAATCTC] [+] EMBL CF327168 [TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACGCTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCT ] [+] EMBL CB681184 [ AACAACTTCAGTAAAAAAATTTGAAATCACACCTTTTCGTAACAAATATACCCCACATTGACATTGACTCTATAAAAGGGGTCTCTCATTAACATGTATGAAAAAATTGGGAATAAACCTCAAATTTCTAGTATAGTCCTTATCTGCTCAGGGGAGTGTTTTACTAAAAACCTTGGGGCAGGGGAACAATTCTTTGGATCCACCACTGCCTTATAAATCAGTTCATAAGCTTCCGCCAAAACTCTAGCCAAACCATAACATGCATCAAAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGGAAGGAACCTTCTGTTCCAGTCACTAAACCATAAAATGCCTTCAAGCATTCCAACAACATTTGCGGGGATGTCTCCACAATATCAGCCAAAGGGCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTATGGCATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGGGGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTGGCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAATTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGAATCTC] [-] EMBL AK058500 [ ACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAGTAGAGCTATAGTCCTTTATGTATGGCATCTTGTTTG ] consensusID : consensus_6410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGTCAGGCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAGAACGCAACCTTGGTACCTGCAGCTGTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATTGNGGTGATGTCTCCACAATATCAGCAAAGGTCGTGCGTCATCCTTGCTGCAGTAGAACTATAGTCCTTTATGTATTGGGATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTTTATCTCA] [-] EMBL BM038484 [TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGTCAGGCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAGAACGCAACCTTGGTACCTGCAGCTGTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATTGNGGTGATGTCTCCACAATATCAGCAAAGGTCGTGCGTCATCCTTGCTGCAGTAGAACTATAGTCCTTTATGTATTGGGATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTTTATCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6410#0 TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACG 60 consensus_6410#1 ------------------------------------------------------------ consensus_6410#0 CTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACA 120 consensus_6410#1 ---------TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACA 51 ** ****** ********************************** consensus_6410#0 CCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTA 180 consensus_6410#1 CCTTTTCGTAGCAAATATACCCCACAT-GACATTGACTCTATAAAAGGGTTCTCTCATTA 110 *************************** ******************************** consensus_6410#0 ACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAG 240 consensus_6410#1 ACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTG-TCAG 169 ******************************************************* **** consensus_6410#0 GCGAG-TGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCAC-TGC 298 consensus_6410#1 GCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGC 229 ***** ************************************** *********** *** consensus_6410#0 CTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCA-TGCATCAG 357 consensus_6410#1 CTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAG 289 *************************************************** ******** consensus_6410#0 AACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCA 417 consensus_6410#1 AACGCAACCTTGGTACCTGCAGCTG-TCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCA 348 ************************* ********************************** consensus_6410#0 CTAGACCATAGAA-TGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATA 476 consensus_6410#1 CTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATT-GNGGTGATGTCTCCACAATA 407 ************* ************************* * ****************** consensus_6410#0 TCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTAT-GG 535 consensus_6410#1 TCAGC-AAAGGTCGTGCGTCATCCTTGCTGC-AGTAGAACTATAGTCCTTTATGTATTGG 465 ***** ************************* * * ******************** ** consensus_6410#0 CATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGG 595 consensus_6410#1 GATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTT-TATCTCA---- 520 ******** **** ************** **** ****** ****** * * * consensus_6410#0 GGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTG 655 consensus_6410#1 ------------------------------------------------------------ consensus_6410#0 GCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAA 715 consensus_6410#1 ------------------------------------------------------------ consensus_6410#0 TTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGA 775 consensus_6410#1 ------------------------------------------------------------ consensus_6410#0 ATCTC 780 consensus_6410#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||