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Oryza sativa
cluster # 6411 cluster # 6411       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6411#0 length = 1574 sequences # 2  
consensus_6411#1 length = 1514 sequences # 1  
consensus_6411#2 length = 415 sequences # 1  

consensusID : consensus_6411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1574
fasta sequence
                              [GGAGTAGCGGACGCGGTGCCCTGTTCGCGTACGCAAGGAGGAATTCGCCGCGGAGTCCTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATACAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGTAAGAGCACTAAAGAGCTTCTCTGAAGCATTTTGGGACATGTATTTTTGGCTGGATTGATAATATATATTTGATCCATGCCAGGAACTAAGAACACCATTGCTTTTTGTTGCTTACATATTATCACTGCTAATTCAGATGCCAAGGCTGGGGCATGTATTATTTGTTGAAACAATGTACTTTTTATTTTAAAAAGGTTCAAGTAGTCAGTAGACCTTATGATCTATTGATTGTATTACTCGGACGATATCCCAAATGCTTTAATTCGTCATGGCAAA]

[+] EMBL AK103911             [GGAGTAGCGGACGCGGTGCCCTGTTCGCGTACGCAAGGAGGAATTCGCCGCGGAGTCCTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATACAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGTAAGAGCACTAAAGAGCTTCTCTGAAGCATTTTGGGACATGTATTTTTGGCTGGATTGATAATATATATTTGATCCATGCCAGGAACTAAGAACACCATTGCTTTTTGTTGCTTACATATTATCACTGCTAATTCAGATGCCAAGGCTGGGGCATGTATTATTTGTTGAAACAATGTACTTTTTATTTTAAAAAGGTTCAAGTAGTCAGTAGACCTTATGATCTATTGATTGTATTACTCGGACGATATCCCAAATGCTTTAATTCGTCATGGCAAA]
[+] EMBL CB660337             [                                                                                                                                                                                                                                                                                                                                   TACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCATATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATACAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_6411#0 GGAGTAGCGGACGCGGTGCCCTGTTCGCGTACGCAAGGAGGAATTCGCCGCGGAGTCCTC TCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATG GAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGG CTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAG TTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGA GGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAA ATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTT GCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGA GCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAAC TTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAG TTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTC AAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTG TCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAA GATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATT TTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGT ATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCAC TATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATACAATAGCTGAT TTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACA CCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTTTTA TGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACTGAA CTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCCCTA CATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGTAAGAGCACTAAAGAGCTTCTCT GAAGCATTTTGGGACATGTATTTTTGGCTGGATTGATAATATATATTTGATCCATGCCAG GAACTAAGAACACCATTGCTTTTTGTTGCTTACATATTATCACTGCTAATTCAGATGCCA AGGCTGGGGCATGTATTATTTGTTGAAACAATGTACTTTTTATTTTAAAAAGGTTCAAGT AGTCAGTAGACCTTATGATCTATTGATTGTATTACTCGGACGATATCCCAAATGCTTTAA TTCGTCATGGCAAA



consensusID : consensus_6411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1514
fasta sequence
                              [CTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAGGTGTGATACAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGGTTCTTAAATCGGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAATTAAAGCCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAATTGCTGCAGTAGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTCTTGCAATAAGTAAGGTTATTAA]

[+] EMBL AK072647             [CTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAGGTGTGATACAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGATAATATTCTGTTTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGGTTCTTAAATCGGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAATTAAAGCCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAATTGCTGCAGTAGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTCTTGCAATAAGTAAGGTTATTAA]


>consensus_6411#1 CTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGG ATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTT AGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCAT AAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAG AGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTC CAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGAT GTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATG GGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGG AACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTG GAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAG GTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCA CTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATT AAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCA ATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAG AGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATG CACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAGGTGTGATACAATAGCT GATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGA ACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAGTT TTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGACT GAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCGCC CTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGATAATATTCTGTTTGGTTGT TGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGGTTCTTAAATCGGGGTTC TGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAATTAAAGCCGATTCA CACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAATTGCTGCAGT AGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTCTTGCAATA AGTAAGGTTATTAA



consensusID : consensus_6411#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence
                              [ATCCTGCTAAGTGGGATGAGATTGCAGATGTNGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGANTATGAGGATTTTAAAAGANTTAAAGATGCTACAGGTTTGTNTGCTCAGTTAACATTNCTCANTTTCTTTTGTTTAGTAAAGTAGCTGTCTGTCCAGTTTTACTATAAANCTATAATTNGGCAGAGTATAGCAAACAGAGGGAGATATAGAAATGANTCTAAAATTNGTCCCATTNGTGTTTCTCCCTTTACCAGTTATCAATATTGAGCTTACTTTTCTACTACCCAAAGCAATCTATATGTACTGCGGAGTGTTTCCTAAATACCATAGGAAACCGAACATCTGAAAAATTCAGTGACTACAATATTCATTTATGAGCAACCATGAGTATCATA]

[+] EMBL C71941               [ATCCTGCTAAGTGGGATGAGATTGCAGATGTNGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGANTATGAGGATTTTAAAAGANTTAAAGATGCTACAGGTTTGTNTGCTCAGTTAACATTNCTCANTTTCTTTTGTTTAGTAAAGTAGCTGTCTGTCCAGTTTTACTATAAANCTATAATTNGGCAGAGTATAGCAAACAGAGGGAGATATAGAAATGANTCTAAAATTNGTCCCATTNGTGTTTCTCCCTTTACCAGTTATCAATATTGAGCTTACTTTTCTACTACCCAAAGCAATCTATATGTACTGCGGAGTGTTTCCTAAATACCATAGGAAACCGAACATCTGAAAAATTCAGTGACTACAATATTCATTTATGAGCAACCATGAGTATCATA]


>consensus_6411#2 ATCCTGCTAAGTGGGATGAGATTGCAGATGTNGTGTCTGCACTGTCAATTCCAGTTATAG CTAATGGAGATGTATTTGANTATGAGGATTTTAAAAGANTTAAAGATGCTACAGGTTTGT NTGCTCAGTTAACATTNCTCANTTTCTTTTGTTTAGTAAAGTAGCTGTCTGTCCAGTTTT ACTATAAANCTATAATTNGGCAGAGTATAGCAAACAGAGGGAGATATAGAAATGANTCTA AAATTNGTCCCATTNGTGTTTCTCCCTTTACCAGTTATCAATATTGAGCTTACTTTTCTA CTACCCAAAGCAATCTATATGTACTGCGGAGTGTTTCCTAAATACCATAGGAAACCGAAC ATCTGAAAAATTCAGTGACTACAATATTCATTTATGAGCAACCATGAGTATCATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6411#0      GGAGTAGCGGACGCGGTGCCCTGTTCGCGTACGCAAGGAGGAATTCGCCGCGGAGTCCTC 60
consensus_6411#1      ---------------------------------------------------------CTC 3
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATG 120
consensus_6411#1      TCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCGCGGCGGGGATG 63
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGG 180
consensus_6411#1      GAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTTAGG 123
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAG 240
consensus_6411#1      CTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCATAAG 183
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGA 300
consensus_6411#1      TTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAGAGA 243
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAA 360
consensus_6411#1      GGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTCCAA 303
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTT 420
consensus_6411#1      ATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGATGTT 363
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGA 480
consensus_6411#1      GCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATGGGA 423
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAAC 540
consensus_6411#1      GCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGGAAC 483
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAG 600
consensus_6411#1      TTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAG 543
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTC 660
consensus_6411#1      TTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAGGTC 603
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      AAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTG 720
consensus_6411#1      AAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTG 663
consensus_6411#2      ----------------ATCCTGCTAAGTGGGATGAGATTGCAGATGTNGTGTCTGCACTG 44
                                      ******************************* ************

consensus_6411#0      TCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAA 780
consensus_6411#1      TCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATTAAA 723
consensus_6411#2      TCAATTCCAGTTATAGCTAATGGAGATGTATTTGANTATGAGGATTTTAAAAGANTTAAA 104
                      *********************************** ****************** *****

consensus_6411#0      GATGCTACAGGT--GCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAA 838
consensus_6411#1      GATGCTACAGGT--GCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCAA 781
consensus_6411#2      GATGCTACAGGTTTGTNTGCTCAGTTAACATTNCTCANTTTCTTTTGTTTAGTAAAGTAG 164
                      ************  *     ** ** *   ** *      *    ***  * *     * 

consensus_6411#0      TTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGA 898
consensus_6411#1      TTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAGA 841
consensus_6411#2      CTGTCTGTCC-AGTTTTACTATAAANCTATAATTNGGCAGAGTATAGCAAACAGAGGGAG 223
                       * * ***** *     *  * *       *    * ** *  * ** *           

consensus_6411#0      GTATTTTG-TGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATG 957
consensus_6411#1      GTATTTTG-TGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATG 900
consensus_6411#2      ATATAGAAATGANTCTAAAATTNGTCCCATTNGTGTTTCTCCCTTTACCAGTTATCAAT- 282
                       ***     **   * *  *** *                ** *  *  *  *   *** 

consensus_6411#0      CACTATTCTTGCCTTGA-ATTCCCTGAAGGAAAAGGTGTGAACAAGTGTG-ATACAATAG 1015
consensus_6411#1      CACTATTCTTGCCTTGA-ATTCCCTGAAGGAAAAGGTGTGAACAGGTGTG-ATACAATAG 958
consensus_6411#2      -ATTGAGCTTACTTTTCTACTACCCAAAGCAATCTATATGTACTGCGGAGTGTTTCCTAA 341
                       * *   *** * **   * * **  *** **    * ** **    * *  *    ** 

consensus_6411#0      CTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATT 1075
consensus_6411#1      CTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATT 1018
consensus_6411#2      ATACCATAGGAAACCGAACATCTGAAAAATTCAGTGACTACAATATT-CATTTATGAGCA 400
                       *    ***  ** * *      *** * * *    * * *  * ** **  ** **   

consensus_6411#0      GAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAG 1135
consensus_6411#1      GAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCATACCAG 1078
consensus_6411#2      ----ACCATGAGTATCATA----------------------------------------- 415
                          *** *** * *                                             

consensus_6411#0      TTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGA 1195
consensus_6411#1      TTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAGTTTTGA 1138
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCG 1255
consensus_6411#1      CTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCTGGAGCG 1198
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGTAAGAGCACTAAAGAGCT 1315
consensus_6411#1      CCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGATAATATTCTGTTTGGTT 1258
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TCTCTGAAGCATTTTGGGACATGTATTTTTGGCTGGATTGATAATATATATTTGATCCAT 1375
consensus_6411#1      GTTGGACATCACCTATGGGTG-GGGCTTCAGTCTCGATCTCTCAGGT-TCTTAAATC--- 1313
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GCCAGGAACTAAGAACACCATTGCTTTTTGT-TGCTTACATATTATCACTGCTAATTCAG 1434
consensus_6411#1      --GGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAATTAAA 1371
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ATGCCAAGGCTGGGGCATGTATTATTTGTTGAAACAATGTACTTTTTATTTTAAAAAGGT 1494
consensus_6411#1      GCCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAAT 1431
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TCAAGTAGTCAGTAGACCTTATGATCTATTGATTGTATT--ACTCGGACGATATCCCAAA 1552
consensus_6411#1      TGCTGCAGTAGACAAA--TTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGT 1489
consensus_6411#2      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TGCTTTAATTCGTCATGGCAAA--- 1574
consensus_6411#1      TTCTTGCAATAAGTAAGGTTATTAA 1514
consensus_6411#2      -------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)