These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence [GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGGCGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCGCCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGGGAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACGACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCATCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTCCAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGTTGTTCTTGGAAAATTGCGAAGGCGTTGTG] [+] EMBL AK103703 [GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGGCGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCGCCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGGGAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACGACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCATCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTCCAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGTTGTTCTTGGAAAATTGCGAAGGCGTTGTG] [+] EMBL C71671 [ GATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTNTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGNGGA NTGAAATCAGATTGCA TTTTCTC ] consensusID : consensus_6415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCAGAGGCCCAGACAAGGGGGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAAAAAA] [-] EMBL CA759298 [CCAGAGGCCCAGACAAGGGGGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAAAAAA] consensusID : consensus_6415#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATCGTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA] [-] EMBL CA759297 [ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATCGTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6415#0 GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGG 60 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 CGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCG 120 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 CCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGG 180 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 GAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACG 240 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 ACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCA 300 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 TCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTC 360 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 CTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTC 420 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 CAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTT 480 consensus_6415#1 ------------------------------------------------------------ consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 GGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTT 540 consensus_6415#1 ----------------------------------------------------------CC 2 consensus_6415#2 ------------------------------------------------------------ consensus_6415#0 GATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTG 600 consensus_6415#1 AGAGGCCCAGACAAGGG------GGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTG 56 consensus_6415#2 -----------------------ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTG 37 * ************************ consensus_6415#0 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 660 consensus_6415#1 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 116 consensus_6415#2 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 97 ************************************************************ consensus_6415#0 ACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 720 consensus_6415#1 ACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 176 consensus_6415#2 ACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 157 ***** **** ************************************************* consensus_6415#0 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 780 consensus_6415#1 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 236 consensus_6415#2 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 217 ************************************************************ consensus_6415#0 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 840 consensus_6415#1 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 296 consensus_6415#2 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 277 ************************************************************ consensus_6415#0 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 900 consensus_6415#1 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 356 consensus_6415#2 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 337 ************************************************************ consensus_6415#0 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATC 960 consensus_6415#1 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATC 416 consensus_6415#2 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATC 397 **************************************** ******** ********** consensus_6415#0 GTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 1020 consensus_6415#1 GTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 476 consensus_6415#2 GTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 457 ********** ** ********************************************** consensus_6415#0 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAA 1080 consensus_6415#1 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAA 536 consensus_6415#2 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAA 517 ********************************************* *********** ** consensus_6415#0 AATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGT 1140 consensus_6415#1 AATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAA 596 consensus_6415#2 AATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA---------------------- 555 ************************ * * * consensus_6415#0 TGTTCTTGGAAAATTGCGAAGGCGTTGTG 1169 consensus_6415#1 AAAA------------------------- 600 consensus_6415#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||