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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence
[TTTTTGCGTCCTGATCTAGTTCAATATGTGAGCAATTTTTTTGCATTTTTGCGGCCATATAGATCCATATTTCTGTCATTGTTTTCAATCAAAACTAAAAGGGTATATGGCTGTGGGACAATGACAAATCTTAGATGATTTTGTAGACTAAGAGGTGAAGGATTCAACCGTCATTTTGTAATTTTGTAAGCTATTAACAGTACATGGTTTTGTTATTTTTGTCAGTAATTAGAATGCATCACCTCACAATTTTAAGTGAAGAGTACTTAGTTTTGTCAGATTTGTGAATTTTGTAGTTTTGTCAGCTACTAAACATGAATTTGTTAGTTCTTTAAAAAAAAGTCATATTTTGTATTTGGCAGCATCTCACATTTTTAAATTTTGTCATATTTGTTTTTGTTTTTGTCAATTTTTAAAATTTTGCTACATATTTCTATTGTGTTCCATATTTTACTAAAGCTTTGCCCGGTCTATAAAGCTTTGCTGCATCTTTGTCTTTGTATTTGTTTTTGTCTTTGTCTTTGTCTTTGACAACTTTTATAAAATTTAGCTACATAGTTCTATTGTTTTTCTCTGTAGGAGTTCAGAGCAAGAGGAGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCAAAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGTTCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCCTGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTTCAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAAATGGCAGCACATTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]
[+] EMBL BP184746 [TTTTTGCGTCCTGATCTAGTTCAATATGTGAGCAATTTTTTTGCATTTTTGCGGCCATATAGATCCATATTTCTGTCATTGTTTTCAATCAAAACTAAAAGGGTATATGGCTGTGGGACAATGACAAATCTTAGATGATTTTGTAGACTAAGAGGTGAAGGATTCAACCGTCATTTTGTAATTTTGTAAGCTATTAACAGTACATGGTTTTGTTATTTTTGTCAGTAATTAGAATGCATCACCTCACAATTTTAAGTGAAGAGTACTTAGTTTTGTCAGATTTGTGAATTTTGTAGTTTTGTCAGCTACTAAACATGAATTTGTTAGTTCTTTAAAAAAAAGTCATATTTTGTATTTGGCAGCATCTCACATTTTTAAATTTTGTCATATTTGTTTTTGTTTTTGTCAATTTTTAAAATTTTGCTACATATTTCTATTGTGTTCCATATTTTACTAAAGCTTTGCCCGGTCTATAAAGCTTTGCTGCATCTTTGTCTTTGTATTTGTTTTTGTCTTTGTCTTTGTCTTTGACAACTTTTATAAAATTTAGCTACATAGTTCTATTGTTTTTCTCTGTAGGAGTTCAGAGCAAGAGGAGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCAAAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGTTCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCCTGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTTCAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAAATGGCAGCACATTTTTAGTTAAAAA ]
[+] EMBL CF328286 [ TGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTTCAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAAATGGCAGCACATTTTTAGTTNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]
consensusID : consensus_6423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CTCGCAGTCATAGCGAAGGGACGTGTTTGGATCGCCGGCGGCGATGCGGCGGCGGGACCATGACGCGGCTGATGCCTTCGACATCGCTCTCTCCTCCGGCGGATGGAGCCCTTGATGTCGTCTTCTCCTCCGGTGGACTTATAGCCCGGCACAAAGGAGGGTGTAATGCGAGCCCCTCTCCTCGCCAGCCGCTGCTCCGATCCAGCCGCCTGCTGTTTTCCCTCTAGCCCTCCTTCCGCCCGCGAACCTCGTCTCGAAGGAGTTCAGAGCAAGAGGAGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCAAAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGTTCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCCTGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTTCAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAAATGGCAGCAC]
[+] EMBL AK062730 [CTCGCAGTCATAGCGAAGGGACGTGTTTGGATCGCCGGCGGCGATGCGGCGGCGGGACCATGACGCGGCTGATGCCTTCGACATCGCTCTCTCCTCCGGCGGATGGAGCCCTTGATGTCGTCTTCTCCTCCGGTGGACTTATAGCCCGGCACAAAGGAGGGTGTAATGCGAGCCCCTCTCCTCGCCAGCCGCTGCTCCGATCCAGCCGCCTGCTGTTTTCCCTCTAGCCCTCCTTCCGCCCGCGAACCTCGTCTCGAAGGAGTTCAGAGCAAGAGGAGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCAAAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGTTCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCCTGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTTCAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAAATGGCAGCAC]
consensusID : consensus_6423#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[ATGGGTTGAAGGAGTAGAAAAATATGCCTGCCCATTTTTAGTAGAATTTAGAGTTTTACCCACTTCCGGTTTTGCTGTAATTAGGGTTCAACAAATTGACTCAAGATTGTAGCAAACCCTGCATACCATTTATATATTTCCAGAAAAAATGGCAGCCCATTTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF328285 [ATGGGTTGAAGGAGTAGAAAAATATGCCTGCCCATTTTTAGTAGAATTTAGAGTTTTACCCACTTCCGGTTTTGCTGTAATTAGGGTTCAACAAATTGACTCAAGATTGTAGCAAACCCTGCATACCATTTATATATTTCCAGAAAAAATGGCAGCCCATTTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6423#0 TTTTTGCGTCCTGATCTAGTTCAATATGTGAGCAATTTTTTTGCATTTTTGCGGCCATAT 60
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ------------------------------------------------------------
consensus_6423#0 AGATCCATATTTCTGTCATTGTTTTCAATCAAAACTAAAAGGGTATATGGCTGTGGGACA 120
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ------------------------------------------------------------
consensus_6423#0 ATGACAAATCTTAGATGATTTTGTAGACTAAGAGGTGAAGGATTCAACCGTCATTTTGTA 180
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ------------------------------------------------------------
consensus_6423#0 ATTTTGTAAGCTATTAACAGTACATGGTTTTGTTATTTTTGTCAGTAATTAGAATGCATC 240
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ------------------------------------------------------------
consensus_6423#0 ACCTCACAATTTTAAGTGAAGAGTACTTAGTTTTGTCAGATTTGTGAATTTTGTAGTTTT 300
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ------------------------------------------------------------
consensus_6423#0 GTCAGCTACTAAACATGAATTTGTTAGTTCTTTAAAAAAAAGTCATATTTTGTATTTGGC 360
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 ----------------------CTCGCAGTCATAGCGAAGGGACGTGTTTGGATCGCCGG 38
consensus_6423#0 AGCATCTCACATTTTTAAATTTTGTCATATTTGTTTTTGTTTTTGTCAATTTTTAAAATT 420
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 CGGCGATGCGGCGGCGGGACCATGACGCGGCTGATGCCTTCGACATCGCTCTCTCCTCCG 98
consensus_6423#0 TTGC-TACATATTTCTATTGTGTTCCATATTTTACTAAAGCTTT-GCCCGGTCTATA--A 476
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 GCGGATGGAGCCCTTGATGTCGTCTTCTCCTCCGGTGGACTTATAGCCCGGCACAAAGGA 158
consensus_6423#0 AGCTTTGCTGCATCTTTGTCTTTGTATTTGTTTTTGTCTTTGTCTTTGTCTTTGACAACT 536
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 GGGTGTAATGCGAGCCCCTCTCCTCGCCAGCCGCTGCTCCGATCCAGCCGCCTGCTGTTT 218
consensus_6423#0 TTTATAAAATTTAGCTACATAGTTCTATTGTTTTTCTCTGTAGGAGTTCAGAGCAAGAGG 596
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 TCCCTCTAGCCCTCCTTCC--GCCCGCGAACCTCGTCTCGAAGGAGTTCAGAGCAAGAGG 276
consensus_6423#0 AGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCA 656
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 AGCCTAGGGGCCATGGCCGACGATGCCTTTCTAGAGACCCAAGCAATTCCAAATGTGCCA 336
consensus_6423#0 AAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGT 716
consensus_6423#2 ------------------------------------------------------------
consensus_6423#1 AAGTGAGCAATTCCTATGTGCTACTTCACATTGTGCAAACTACAGAGGCAAGACTATTGT 396
consensus_6423#0 TCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCC 776
consensus_6423#2 -----------------------------ATGGGTTGAAGGAGTAGAAA---AATATGCC 28
consensus_6423#1 TCAAACTGTTTCTGTTCAAATGTTTCTGTTCAGACTGTATCTTTCAGTTTCCGATATGCC 456
* ** * * *******
consensus_6423#0 TGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTT 836
consensus_6423#2 TGCCCATTTTTAGTAGAATTTAGAGTTTTACCCACTTCCGGTTTTGCTGTAATTAGGGTT 88
consensus_6423#1 TGACCATTTCTAGTAGAATCTAGAGTTCTACACACTTCCGGTTCTGCTGTAATTAGCGTT 516
** ****** ********* ******* *** *********** ************ ***
consensus_6423#0 CAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAA 896
consensus_6423#2 CAACAAATTGACTCAAGATTGTAGCAAACCCTGCATACCATTTATATATTTCCAGAAAAA 148
consensus_6423#1 CAACAAATTGACTCAAGATTGTAGCAAACACTGCATACCATTCATATATCTCCAGAAAAA 576
***************************** ************ ****** **********
consensus_6423#0 ATGGCAGCACATTTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 956
consensus_6423#2 ATGGCAGCCCATTTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 208
consensus_6423#1 ATGGCAGCAC-------------------------------------------------- 586
******** *
consensus_6423#0 AAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT 994
consensus_6423#2 --------------------------------------
consensus_6423#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||