These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1812 fasta sequence [TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCAGTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC-TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAAACATTTTGCAACTTCTCTTAGCTATGCACGAGCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAACCGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATATCTAAGTTTTCTTCGATGTTATGTG] [+] EMBL AK103561 [TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCAGTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAA ] [+] EMBL AK064247 [ CAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCTGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAAACATTTTGCAACTTCTCTTAGCTATGCACGAGCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAACCGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATATCTAAGTTTTCTTCGATGTTATGTG] [+] EMBL C27336 [ CTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCNACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCNTGCTGCCTGACCTTAACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCAAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTTCTTGACGCTTGGAGCACGAGGTTGGCTTtn ] consensusID : consensus_6432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCCCATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTCCTANGGCAATTCAACNGNGCCCATNGGCTTATTTAATNAGTTCTAAGTGAAAATTGACTTTGAATCC] [+] EMBL D43187 [TCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCCCATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTCCTANGGCAATTCAACNGNGCCCATNGGCTTATTTAATNAGTTCTAAGTGAAAATTGACTTTGAATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6432#0 TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCA 60 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACC 120 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 TCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGC 180 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTC 240 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCC 300 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTC 360 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGC 420 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGC 480 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 AGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAG 540 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAAC 600 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGT 660 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGC 720 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGC 780 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 ATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTC 840 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGC 900 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGAC 960 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAG 1020 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 CTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCC 1080 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GACGACGACGAGGGCGGCGACTCCTGGACGCTGGAGCACGAGGTGGCCTTCGGCCCGATC 1140 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 TGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATT 1200 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 GATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGAC 1260 consensus_6432#1 ------------------------------------------------------------ consensus_6432#0 ATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTG 1320 consensus_6432#1 -----------------------------TCGTTTGGGTTGTGCTGACTTTCCCCTCCTG 31 ******************************* consensus_6432#0 CCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGC 1380 consensus_6432#1 CCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGC 91 ************************************************************ consensus_6432#0 AAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGAC 1440 consensus_6432#1 AAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGAC 151 ************************************************************ consensus_6432#0 ATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACA 1500 consensus_6432#1 ATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACA 211 ************************************************************ consensus_6432#0 GACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGG 1560 consensus_6432#1 GACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGG 271 ************************************************************ consensus_6432#0 GAAT-GCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCT-GATGAA---CTTTGTGGCCCCT 1615 consensus_6432#1 GAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCC 331 **** ******************************* **** * ******* *** consensus_6432#0 CATTTT--GACAAATTCT----GGGAAACA--TTTTGCAACTTCTCTTAGCTATGCACGA 1667 consensus_6432#1 CATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTC--CTANGGCAAT 389 ****** ****** * ******** ***** ** * ** *** * consensus_6432#0 GCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAAC 1727 consensus_6432#1 TCAACNGNGCCCATNGGCTTATT----TAATNAGTTCTAAGTGAAAATTGA-CTTTGAAT 444 * * ** * * * * * * * * * * **** ******* consensus_6432#0 CGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATA 1787 consensus_6432#1 CC---------------------------------------------------------- 446 * consensus_6432#0 TCTAAGTTTTCTTCGATGTTATGTG 1812 consensus_6432#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||