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Oryza sativa
cluster # 6436 cluster # 6436       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6436#0 length = 1266 sequences # 3  
consensus_6436#1 length = 420 sequences # 1  

consensusID : consensus_6436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1266
fasta sequence
                              [CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC]

[+] EMBL AK101378             [CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTT                                                                                          ]
[+] EMBL AK059986             [ GAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGT                                                                                                                                                                   ]
[-] EMBL CF319148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ctgAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATTGGAGGAGCACCAAGAATTTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGGTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAAAAATGTGTTTGCTTCCTTTTTCGGGGGTTTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC]


>consensus_6436#0 CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGC CGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGAC TTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCC CCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGA GAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTG ATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAG TTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTG TTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTC TCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTG GATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATG GACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAA AAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGA TTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAG CACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTT CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGC TATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAG CGTATC



consensusID : consensus_6436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence
                              [GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA]

[+] EMBL CF319147             [GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA]


>consensus_6436#1 GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCA CTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAA TCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGA ATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCAC TTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGT TTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAA GTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6436#0      CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGC 60
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      CGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGAC 120
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      TTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCC 180
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      CCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGA 240
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      GAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTG 300
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      ATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAG 360
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      TTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTG 420
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      TTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTC 480
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      TCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTG 540
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      GATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATG 600
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      GACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAA 660
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      AAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGA 720
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      TTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAG 780
consensus_6436#1      ------------------------------------------------------------
                                                                                  

consensus_6436#0      CACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTT 840
consensus_6436#1      ----------------------GACACTGCATGGACT---GAAGGAGTATAAGAAAGGTT 35
                                             *      *  ** *    ****** ************

consensus_6436#0      CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 900
consensus_6436#1      CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 95
                      ************************************************************

consensus_6436#0      GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 960
consensus_6436#1      GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 155
                      ************************************************************

consensus_6436#0      TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 1020
consensus_6436#1      TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 215
                      ************************************************************

consensus_6436#0      AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 1080
consensus_6436#1      AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 275
                      ************************************************************

consensus_6436#0      TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 1140
consensus_6436#1      TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 335
                      ************************************************************

consensus_6436#0      GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGC 1200
consensus_6436#1      GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTA-CTTGTTATGAAAGAGAAGGCGC 394
                      ************************************* ************ * *******

consensus_6436#0      TATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAG 1260
consensus_6436#1      TATCTTTTGCTGAAAAAAAAAAAAAA---------------------------------- 420
                      *** **********************                                  

consensus_6436#0      CGTATC 1266
consensus_6436#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)