These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1266 fasta sequence [CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC] [+] EMBL AK101378 [CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTT ] [+] EMBL AK059986 [ GAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGT ] [-] EMBL CF319148 [ ctgAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATTGGAGGAGCACCAAGAATTTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGGTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAAAAATGTGTTTGCTTCCTTTTTCGGGGGTTTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC] consensusID : consensus_6436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA] [+] EMBL CF319147 [GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6436#0 CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGC 60 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 CGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGAC 120 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 TTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCC 180 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 CCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGA 240 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 GAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTG 300 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 ATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAG 360 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 TTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTG 420 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 TTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTC 480 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 TCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTG 540 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 GATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATG 600 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 GACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAA 660 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 AAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGA 720 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 TTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAG 780 consensus_6436#1 ------------------------------------------------------------ consensus_6436#0 CACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTT 840 consensus_6436#1 ----------------------GACACTGCATGGACT---GAAGGAGTATAAGAAAGGTT 35 * * ** * ****** ************ consensus_6436#0 CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 900 consensus_6436#1 CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 95 ************************************************************ consensus_6436#0 GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 960 consensus_6436#1 GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 155 ************************************************************ consensus_6436#0 TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 1020 consensus_6436#1 TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 215 ************************************************************ consensus_6436#0 AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 1080 consensus_6436#1 AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 275 ************************************************************ consensus_6436#0 TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 1140 consensus_6436#1 TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 335 ************************************************************ consensus_6436#0 GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGC 1200 consensus_6436#1 GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTA-CTTGTTATGAAAGAGAAGGCGC 394 ************************************* ************ * ******* consensus_6436#0 TATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAG 1260 consensus_6436#1 TATCTTTTGCTGAAAAAAAAAAAAAA---------------------------------- 420 *** ********************** consensus_6436#0 CGTATC 1266 consensus_6436#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||