These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence [AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC] [+] EMBL AU068093 [AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAA ] [+] EMBL AK061608 [ TTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAGTGTCAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC] consensusID : consensus_6439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA] [-] EMBL CF328928 [TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA] consensusID : consensus_6439#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA] [+] EMBL AU077420 [AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6439#0 --------AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNC 52 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTC 60 consensus_6439#0 TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 112 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 120 consensus_6439#0 ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 172 consensus_6439#2 ----------------------------AGTGGATTCATGTGCGGTCTTACGACAATGCA 32 consensus_6439#1 ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 180 ******************************** consensus_6439#0 TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 232 consensus_6439#2 TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 92 consensus_6439#1 TCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 240 **************************** ******************************* consensus_6439#0 GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 292 consensus_6439#2 GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 152 consensus_6439#1 GCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGT 300 ***************************** ****************************** consensus_6439#0 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 352 consensus_6439#2 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 212 consensus_6439#1 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAA 360 ****************************************************** * * * consensus_6439#0 CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 412 consensus_6439#2 CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 272 consensus_6439#1 ACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACA 420 *************************************** * ************** consensus_6439#0 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 472 consensus_6439#2 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 332 consensus_6439#1 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 480 ************************************************************ consensus_6439#0 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 532 consensus_6439#2 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 392 consensus_6439#1 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAA 540 *************************************************** **** consensus_6439#0 TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGC 592 consensus_6439#2 TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA-------- 444 consensus_6439#1 AAAAAA---------AAAAAAAAAAAAAATGTCATGCCGTTA------------------ 573 * * * ** * *** ** *** consensus_6439#0 TTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGT 652 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 TTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAA 712 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 GAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGT 772 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 TTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCA 832 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 TCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGT 892 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 CATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTA 952 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 CTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTA 1012 consensus_6439#2 ------------------------------------------------------------ consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 TTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC 1054 consensus_6439#2 ------------------------------------------ consensus_6439#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||