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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2490 fasta sequence
[CCGTCACGTTCATTCCCCGCGTGCGATCCCAAACCCTAAACCCTCTCCCCATGGCCGCCGCCGCCTCGCCCAAGCGCTTGAGGGTCTACTCGTCCGTCTCGGGCGACGGCCGCTCCGCGAACGGCGCGGGGAGCGGCAAGCGCGTGGGGACCCACAACGGCAGCTTCCACTGCGACGAGGCGCTCGGGTGCTACCTCATCCGCCTCACCTCCCAGTTCGCCGGCGCCGACGTCGTCCGCACCCGCGACCCCCAGATCCTCGATACTCTGGATGCTGTGCTTGATGTTGGTGGTGTCTATGATCCCAGCCGGCATCGCTACGATCATCACCAGAAGGGCTTTAATGAGGTCTTTGGACATGGCTTTAACACAAAACTTAGCAGTGCCGGGCTTGTTTACAAGCACTTTGGTAAGGAGATAATTGCAAAGGAGCTTGAAGTTAGTGAAGACCATGAAGATGTTCATCGGTTGTATCTTGCAATATATAAAAGCTTTGTTGAGGCGCTTGATGCAGTCGACAACGGAATCAATCAATATGACACAGACCAACCCCCAAAGTATGTGAACAACACACACTTGTCTTCACGCGTTGGGCGTCTTAATCCAGACTGGACCGATCCAGACCAGTCACCTGAGAAGGAAAATGCTGCATTTCAACAGGCAATGATGCTTGCTGGAAGTGAATTTATGGAGAGTGTTCGCTTTCATGTTAAGTCATGGTTACCTGCGAGATCTATTGTCTTGGAGTGTTTGTTGTCAAGAGGAAAGGTTGATCCAAGTGAAGAAATTATGGTTTTGGATAGATTCTGCCCATGGAAACTTCATCTGTTTGAGCTTGAAGAGGAGCTGAAGATTGATCCCCTCACGAAGTATGTGTTGTACCAGGATGAGAGGAGCAAAAGTTGGAGAGTACAAGCTGTTGGCGTTGCTCCGGATAGATTTGAGAGCCGAAAGCCTCTGCCGGAAAAGTGGAGGGGCTTGAGAGATGATGAACTGTCAAACGATATTGGCATTCCAGGATGTGTCTTTGTTCATATGAGCGGCTTCATTGGCGGCAATAAGACGTATGAGGGAGCGTTGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTGACTCGTAATTGACATTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTATGATTACATTTTATAAAGATTAGAAAAGATGATGGGACATATCCATTTGTCGTGGTAAGCATATATGCATTTGCAGCTAAATGACTATTACATTTACTTACGGCGGAAAAATTACCAGATGATGCTACACGTGCTTTGCTAAAAGCCTAAAAGTAAAAGGCGATTAGCGCAGATTTACAAACTTTTTACTTTTAAAATGAGGAAATACATAAGATGAATGTGAAACGCTACGGATAATGGATTGAAGATTTTACATACAACATATGTGCACGAAATATGTGCAAAAATAACAACTACAATGTCATACAGCGCTGTTCCTGGATATCACGGTCGTCGCACCTTCACACGTTTGGCATCTGCGCATGCAGCCTCCAGGTCTCCAAGGAAGAACAAGATCCGATCGGATATCTGCCGCTGCTCGTCCTCGCTACTCTGCGCAGGAGCGTCCTTGCTATCGCAGCTCACATGCTGTCTCGACCCCAAGTACCTCTGGATCTCACCCTGGTAAATCAGGTAGTAATCGCTTCCTTCTCTGATAATCCTGACACCCCTGGAAAGATCAATGAGGCGTAACTTACAGTATTCAGAGTTCATATAGGAGTACTTCAGAGTGACATTGTTGCAGTGTACTACAGAATGTGTGCCACGTCTGAATATCAGGGGACACCGTGACAGTAGGCATGCCAAGATAAGAAGTACAGCTCGAGCGGGATGATAGGCGAGTGAATTCGATGGCAACTTACAGCCCATATCGGTCGCATCGATCCTGCACAATGAAGACGTCCTTCCATGACCTGGAGCCCTCTGGCGCGTAGAACGCTGCAGCATCCGCTCCCCACCTGTCCTTGAACAGCCTGCGCCACAGCTCGTCGTCGGAGGTCAACGTGTTCCACTTCCTGCACACTTGGGGAGCAGAGGCGAGAGATTGGTGATCCAGGAGGTGGAAGATCTTGATGCACAGCTCCGCAGGCAGACCATCCATCTCGTCCCCCCCGAATTCTCCGATCGAGGCGCTCTATCCACCAAAATTCTCTAGAGCTACGAAAGAACCAGCCACAGAAGTGCCAAGACACGACCTCGCTTCCGCCTGCCTGATCCCCGGCTCCACAGATCCGGAGCTGCGGCGTGCTCAGCGGAGCAGGGCACGATGAGCGGAGGGGAGGGGGAGGACGAGAGGTGGAGAGGATGCGG]
[+] EMBL AK102917 [CCGTCACGTTCATTCCCCGCGTGCGATCCCAAACCCTAAACCCTCTCCCCATGGCCGCCGCCGCCTCGCCCAAGCGCTTGAGGGTCTACTCGTCCGTCTCGGGCGACGGCCGCTCCGCGAACGGCGCGGGGAGCGGCAAGCGCGTGGGGACCCACAACGGCAGCTTCCACTGCGACGAGGCGCTCGGGTGCTACCTCATCCGCCTCACCTCCCAGTTCGCCGGCGCCGACGTCGTCCGCACCCGCGACCCCCAGATCCTCGATACTCTGGATGCTGTGCTTGATGTTGGTGGTGTCTATGATCCCAGCCGGCATCGCTACGATCATCACCAGAAGGGCTTTAATGAGGTCTTTGGACATGGCTTTAACACAAAACTTAGCAGTGCCGGGCTTGTTTACAAGCACTTTGGTAAGGAGATAATTGCAAAGGAGCTTGAAGTTAGTGAAGACCATGAAGATGTTCATCGGTTGTATCTTGCAATATATAAAAGCTTTGTTGAGGCGCTTGATGCAGTCGACAACGGAATCAATCAATATGACACAGACCAACCCCCAAAGTATGTGAACAACACACACTTGTCTTCACGCGTTGGGCGTCTTAATCCAGACTGGACCGATCCAGACCAGTCACCTGAGAAGGAAAATGCTGCATTTCAACAGGCAATGATGCTTGCTGGAAGTGAATTTATGGAGAGTGTTCGCTTTCATGTTAAGTCATGGTTACCTGCGAGATCTATTGTCTTGGAGTGTTTGTTGTCAAGAGGAAAGGTTGATCCAAGTGAAGAAATTATGGTTTTGGATAGATTCTGCCCATGGAAACTTCATCTGTTTGAGCTTGAAGAGGAGCTGAAGATTGATCCCCTCACGAAGTATGTGTTGTACCAGGATGAGAGGAGCAAAAGTTGGAGAGTACAAGCTGTTGGCGTTGCTCCGGATAGATTTGAGAGCCGAAAGCCTCTGCCGGAAAAGTGGAGGGGCTTGAGAGATGATGAACTGTCAAACGATATTGGCATTCCAGGATGTGTCTTTGTTCATATGAGCGGCTTCATTGGCGGCAATAAGACGTATGAGGGAGCGTTGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTGACTCGTAATTGACATTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTATGATTACATTTTATAAAGATTAGAAAAGATGATGGGACATATCCATTTGT ]
[-] EMBL CB649625 [ CAATCAATATGACACAGACCAACCCCCAAAGTATGTGAACAACACACACTTGTCTTCACGCGTTGGGCGTCTTAATCCAGACTGGACCGATCCAGACCAGTCACCTGAGAAGGAAAATGCTGCATTTCAACAGGCAATGATGCTTGCTGGAAGTGAATTTATGGAGAGTGTTCGCTTTCATGTTAAGTCATGGTTACCTGCGAGATCTATTGTCTTGGAGTGTTTGTTGTCAAGAGGAAAGGTTGATCCAAGTGAAGAAATTATGGTTTTGGATAGATTCTGCCCATGGAAACTTCATCTGTTTGAGCTTGAAGAGGAGCTGAAGATTGATCCCCTCACGAAGTATGTGTTGTACCAGGATGAGAGGAGCAAAAGTTGGAGAGTACAAGCTGTTGGCGTTGCTCCGGATAGATTTGAGAGCCGAAAGCCTCTGCCGGAAAAGTGGAGGGGCTTGAGAGATGATGAACTGTCAAACGATATTGGCATTCCAGGATGTGTCTTTGTTCATATGAGCGGCTTCATTGGCGGCAATAAGACGTATGAGGGAGCGTTGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTGACTCGTAATTGACATTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTATGATTACATTTTATAAAGATTAGAAAAGATGATGGGACATATCCATT ]
[-] EMBL AK073456 [ AACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTATGATTACATTTTATAAAGATTAGAAAAGATGATGGGACATATCCATTTGTCGTGGTAAGCATATATGCATTTGCAGCTAAATGACTATTACATTTACTTACGGCGGAAAAATTACCAGATGATGCTACACGTGCTTTGCTAAAAGCCTAAAAGTAAAAGGCGATTAGCGCAGATTTACAAACTTTTTACTTTTAAAATGAGGAAATACATAAGATGAATGTGAAACGCTACGGATAATGGATTGAAGATTTTACATACAACATATGTGCACGAAATATGTGCAAAAATAACAACTACAATGTCATACAGCGCTGTTCCTGGATATCACGGTCGTCGCACCTTCACACGTTTGGCATCTGCGCATGCAGCCTCCAGGTCTCCAAGGAAGAACAAGATCCGATCGGATATCTGCCGCTGCTCGTCCTCGCTACTCTGCGCAGGAGCGTCCTTGCTATCGCAGCTCACATGCTGTCTCGACCCCAAGTACCTCTGGATCTCACCCTGGTAAATCAGGTAGTAATCGCTTCCTTCTCTGATAATCCTGACACCCCTGGAAAGATCAATGAGGCGTAACTTACAGTATTCAGAGTTCATATAGGAGTACTTCAGAGTGACATTGTTGCAGTGTACTACAGAATGTGTGCCACGTCTGAATATCAGGGGACACCGTGACAGTAGGCATGCCAAGATAAGAAGTACAGCTCGAGCGGGATGATAGGCGAGTGAATTCGATGGCAACTTACAGCCCATATCGGTCGCATCGATCCTGCACAATGAAGACGTCCTTCCATGACCTGGAGCCCTCTGGCGCGTAGAACGCTGCAGCATCCGCTCCCCACCTGTCCTTGAACAGCCTGCGCCACAGCTCGTCGTCGGAGGTCAACGTGTTCCACTTCCTGCACACTTGGGGAGCAGAGGCGAGAGATTGGTGATCCAGGAGGTGGAAGATCTTGATGCACAGCTCCGCAGGCAGACCATCCATCTCGTCCCCCCCGAATTCTCCGATCGAGGCGCTCTATCCACCAAAATTCTCTAGAGCTACGAAAGAACCAGCCACAGAAGTGCCAAGACACGACCTCGCTTCCGCCTGCCTGATCCCCGGCTCCACAGATCCGGAGCTGCGGCGTGCTCAGCGGAGCAGGGCACGATGAGCGGAGGGGAGGGGGAGGACGAGAGGTGGAGAGGATGCGG]
consensusID : consensus_6440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[TGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTGACTCGTAATTGACTTTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTACGATTACATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF328950 [TGGAAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAACGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATTGACTCGTAATTGACTTTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGGAGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTACGATTACATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6440#0 CCGTCACGTTCATTCCCCGCGTGCGATCCCAAACCCTAAACCCTCTCCCCATGGCCGCCG 60
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CCGCCTCGCCCAAGCGCTTGAGGGTCTACTCGTCCGTCTCGGGCGACGGCCGCTCCGCGA 120
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ACGGCGCGGGGAGCGGCAAGCGCGTGGGGACCCACAACGGCAGCTTCCACTGCGACGAGG 180
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CGCTCGGGTGCTACCTCATCCGCCTCACCTCCCAGTTCGCCGGCGCCGACGTCGTCCGCA 240
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CCCGCGACCCCCAGATCCTCGATACTCTGGATGCTGTGCTTGATGTTGGTGGTGTCTATG 300
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ATCCCAGCCGGCATCGCTACGATCATCACCAGAAGGGCTTTAATGAGGTCTTTGGACATG 360
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GCTTTAACACAAAACTTAGCAGTGCCGGGCTTGTTTACAAGCACTTTGGTAAGGAGATAA 420
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TTGCAAAGGAGCTTGAAGTTAGTGAAGACCATGAAGATGTTCATCGGTTGTATCTTGCAA 480
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TATATAAAAGCTTTGTTGAGGCGCTTGATGCAGTCGACAACGGAATCAATCAATATGACA 540
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CAGACCAACCCCCAAAGTATGTGAACAACACACACTTGTCTTCACGCGTTGGGCGTCTTA 600
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ATCCAGACTGGACCGATCCAGACCAGTCACCTGAGAAGGAAAATGCTGCATTTCAACAGG 660
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CAATGATGCTTGCTGGAAGTGAATTTATGGAGAGTGTTCGCTTTCATGTTAAGTCATGGT 720
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TACCTGCGAGATCTATTGTCTTGGAGTGTTTGTTGTCAAGAGGAAAGGTTGATCCAAGTG 780
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AAGAAATTATGGTTTTGGATAGATTCTGCCCATGGAAACTTCATCTGTTTGAGCTTGAAG 840
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AGGAGCTGAAGATTGATCCCCTCACGAAGTATGTGTTGTACCAGGATGAGAGGAGCAAAA 900
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GTTGGAGAGTACAAGCTGTTGGCGTTGCTCCGGATAGATTTGAGAGCCGAAAGCCTCTGC 960
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CGGAAAAGTGGAGGGGCTTGAGAGATGATGAACTGTCAAACGATATTGGCATTCCAGGAT 1020
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GTGTCTTTGTTCATATGAGCGGCTTCATTGGCGGCAATAAGACGTATGAGGGAGCGTTGG 1080
consensus_6440#1 ---------------------------------------------------------TGG 3
***
consensus_6440#0 AAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAA 1140
consensus_6440#1 AAATGGCAAGAGCTGCTATCAAGTGTTGACTCAACGTTCGACGGAGGCTTCAATCAGTAA 63
************************************************************
consensus_6440#0 CGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATT 1200
consensus_6440#1 CGCACTGTCACCCATGAGCTGCAGTAACACAGTTAACCAGTTGAACTTCATGTTATTATT 123
************************************************************
consensus_6440#0 GACTCGTAATTGACATTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGG 1260
consensus_6440#1 GACTCGTAATTGACTTTTGAGTACTCATGTTCCTTGCGTAAAACATCCTTAGCTGACAGG 183
************** *********************************************
consensus_6440#0 AGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTATGATTACATTTTATAAAGATT 1320
consensus_6440#1 AGAGGCCAGTTGCCTTTTTAATCTCGAACGACGAGTTTACGATTACATTTTAAAAAAAAA 243
*************************************** ************ *** *
consensus_6440#0 AGAAAAGATGATGGGACATATCCATTTGTCGTGGTAAGCATATATGCATTTGCAGCTAAA 1380
consensus_6440#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 287
* **** * * * * * * ** * * *
consensus_6440#0 TGACTATTACATTTACTTACGGCGGAAAAATTACCAGATGATGCTACACGTGCTTTGCTA 1440
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AAAGCCTAAAAGTAAAAGGCGATTAGCGCAGATTTACAAACTTTTTACTTTTAAAATGAG 1500
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GAAATACATAAGATGAATGTGAAACGCTACGGATAATGGATTGAAGATTTTACATACAAC 1560
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ATATGTGCACGAAATATGTGCAAAAATAACAACTACAATGTCATACAGCGCTGTTCCTGG 1620
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ATATCACGGTCGTCGCACCTTCACACGTTTGGCATCTGCGCATGCAGCCTCCAGGTCTCC 1680
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AAGGAAGAACAAGATCCGATCGGATATCTGCCGCTGCTCGTCCTCGCTACTCTGCGCAGG 1740
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AGCGTCCTTGCTATCGCAGCTCACATGCTGTCTCGACCCCAAGTACCTCTGGATCTCACC 1800
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CTGGTAAATCAGGTAGTAATCGCTTCCTTCTCTGATAATCCTGACACCCCTGGAAAGATC 1860
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 AATGAGGCGTAACTTACAGTATTCAGAGTTCATATAGGAGTACTTCAGAGTGACATTGTT 1920
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GCAGTGTACTACAGAATGTGTGCCACGTCTGAATATCAGGGGACACCGTGACAGTAGGCA 1980
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TGCCAAGATAAGAAGTACAGCTCGAGCGGGATGATAGGCGAGTGAATTCGATGGCAACTT 2040
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ACAGCCCATATCGGTCGCATCGATCCTGCACAATGAAGACGTCCTTCCATGACCTGGAGC 2100
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CCTCTGGCGCGTAGAACGCTGCAGCATCCGCTCCCCACCTGTCCTTGAACAGCCTGCGCC 2160
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 ACAGCTCGTCGTCGGAGGTCAACGTGTTCCACTTCCTGCACACTTGGGGAGCAGAGGCGA 2220
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GAGATTGGTGATCCAGGAGGTGGAAGATCTTGATGCACAGCTCCGCAGGCAGACCATCCA 2280
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 TCTCGTCCCCCCCGAATTCTCCGATCGAGGCGCTCTATCCACCAAAATTCTCTAGAGCTA 2340
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 CGAAAGAACCAGCCACAGAAGTGCCAAGACACGACCTCGCTTCCGCCTGCCTGATCCCCG 2400
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GCTCCACAGATCCGGAGCTGCGGCGTGCTCAGCGGAGCAGGGCACGATGAGCGGAGGGGA 2460
consensus_6440#1 ------------------------------------------------------------
consensus_6440#0 GGGGGAGGACGAGAGGTGGAGAGGATGCGG 2490
consensus_6440#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||