cluster # 6446

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Oryza sativa
cluster # 6446 cluster # 6446 Sequences # 4 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6446#0 length = 496 sequences # 4

consensusID : consensus_6446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 496
fasta sequence

                              [TGATAGCAACATTTTCTTAATCAATATTTTAGTATCACAGCAAGTAAATTTTATAATATACTATTCTATCCCTCTCTTTTTTTTTTTACATTGGAAGTATAACTCGATCATACCCTTTGTACCAACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATATACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAGAGTCCTTCAGCCTTTGTTATGAAAATGTGGACGCGATCAAACCAGCCACAAGAACCTGTGAA-ACAAGTGCAAGAAGGGCAACTGCCTGGGCGAAGTGCTTACCAGCGAGCCATGTTGCACTGGATGCCATAATCAACCCCCATAGGAGAAATAAAAAAAGAATAATATAGCAACCTTCTTGGGGGTGATTGAACACCCCTTTCAAGAAATGAGAGAGCATTCCCGCAGCAGCAGAGGTAACCTTCTGGTGTCGGATTCCTTGTCTGACAATTCCTGT]

[+] EMBL CB646521             [TGATAGCAACATTTTCTTAATCAATATTTTAGTATCACAGCAAGTAAATTTTATAATATACTATTCTATCCCTCTCTTTTTTTTTTTACCTTGGAAGTATAACTCGATCATACCCTTTGTACCAACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATATACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAAAGCCCTTCAGCCTTTGTTATGAAAATGGGGACGCGATCAAACCAGCCACAAAAACCTGTGAA ACAAGTGCAAGAAGGGCAACTGCCTGGGCGAAGTGCTTACCAGCGAGCCATGTTGCACTGGATGCCATAATCAACCCCCATAGGAGAAATAAAAAAAGAATAATATAGCAACCTTCTTGGGGGTGATTGAACACCCCT                                                                             ]
[+] EMBL CF329407             [                                                                                 TTTTTTACATTGGAAGTATAACTCGATCATACCCTTTGTACCAACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATATACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAGAGTCCTTCAGCCTTTGTTATGAAAATGTGGACGCGATCAAACCAGCCACAAG                                                                                                                                                                                                                                  ]
[-] EMBL CF329408             [                                                                                  TTTTTACATTGGAAGTATAACTCGATCATACCCTTTGTACCAACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATATACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAGAGTCCTTCAGCCTTTGTTATGAAAATGTGGACGCGATCAAACCAGCCACAAG                                                                                                                                                                                                                                  ]
[+] EMBL CF281482             [                                                                                                                       TACC ACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATATACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAGAGTCCTTCAGCCTTTTTTTTTTTAATGTGGACGCGATCAAACCAGCCACAAGAACCTGTTAATAATTTTGCAAGAAGGGCAACTGCCTGGGCGAAGTGCTTACGAGCGAGCCATGTTGCACCGGATGCCAGAATCAACCCCAACAGGAGAAATAGAAAAAGAATAATATAGTAACCTTCTTGGTGGTGATTGAACACGCCTTTCAAGAAATGAGAGAGCATTCCCGCAGCAGCAGAGGTAACCTTCTGGTGTCGGATTCCTTGTCTGACAATTCCTGT]




>consensus_6446#0
TGATAGCAACATTTTCTTAATCAATATTTTAGTATCACAGCAAGTAAATTTTATAATATA
CTATTCTATCCCTCTCTTTTTTTTTTTACATTGGAAGTATAACTCGATCATACCCTTTGT
ACCAACTAAAGTATGCACACCATCGTATTTGTGGAGACATGCGTGGTAAATGATGTCATA
TACCACAATTCTACCCCTAAATGAATGAGCAAATCGCAGAGTCCTTCAGCCTTTGTTATG
AAAATGTGGACGCGATCAAACCAGCCACAAGAACCTGTGAAACAAGTGCAAGAAGGGCAA
CTGCCTGGGCGAAGTGCTTACCAGCGAGCCATGTTGCACTGGATGCCATAATCAACCCCC
ATAGGAGAAATAAAAAAAGAATAATATAGCAACCTTCTTGGGGGTGATTGAACACCCCTT
TCAAGAAATGAGAGAGCATTCCCGCAGCAGCAGAGGTAACCTTCTGGTGTCGGATTCCTT
GTCTGACAATTCCTGT

clustalw multiple alignements is not computed in this case