These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTCAATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAAATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCAAAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAACTTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAGTTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGCTGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGATGCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAATTCATAAGGTATATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAACCTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTGTGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG] [+] EMBL CA761769 [TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTCAATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAAATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCAAAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAACTTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAGTTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGCTGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGATGCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAATTCATAAGGTATATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAACCTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTGTGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG] consensusID : consensus_6450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAAGTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCAGTGATCCTCATACCATGAATTGTCTCCTTTGGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTCACAGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGATTTCAGGGGAGGACTAAGAACACAAATCGAACGACGTTTCATGGTGAGGAGCTCGACATCCCCCCTTG] [-] EMBL CF329850 [GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAAGTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGC ] [+] EMBL CA760717 [ tctttttttTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCAGTGATCCTCATACCATGAATTGTCTCCTTTGGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTCACAGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGATTTCAGGGGAGGACTAAGAACACAAATCGAACGACGTTTCATGGTGAGGAGCTCGACATCCCCCCTTG] consensusID : consensus_6450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCTGTTACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGGTATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAA] [-] EMBL BE040328 [CTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCTGTTACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGGTATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6450#0 TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTC 60 consensus_6450#2 --------------------------CTTGATGAAAAACCCAATATTTGACAAACTATTC 34 consensus_6450#1 ----------------GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTC 44 ********* ******** *********** *** consensus_6450#0 AATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAA---- 116 consensus_6450#2 AATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAA 94 consensus_6450#1 AATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAA 104 *************** * *************************** ** **** consensus_6450#0 -----ATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCA 171 consensus_6450#2 GTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAA 154 consensus_6450#1 GTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAA 164 **** * ****** ****************** ******* ******* **** * consensus_6450#0 AAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAAC 231 consensus_6450#2 AAAATTAGGGATCAATGTGTAT-AAAAATAGCTAGAC--TGTTGTTATGGAAGGAATTAC 211 consensus_6450#1 AAAATTAGGGATCAATGTGTAT-AAAAATAGCTAGAC--TGTTGTTATGGAAGGAATTAC 221 ************* ******** ************** ****************** ** consensus_6450#0 TTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAG 291 consensus_6450#2 TTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATG 271 consensus_6450#1 TTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATG 281 ************* **** ********* **************************** * consensus_6450#0 TTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGC 351 consensus_6450#2 TGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGC 331 consensus_6450#1 TGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGC 341 * **** *********** *************************** ************* consensus_6450#0 TGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGAT 411 consensus_6450#2 AGCTGTT----------------------------------------------------- 338 consensus_6450#1 AGCAGTGATC-------------------CTCATACCATGAATTG--------------- 367 * * consensus_6450#0 GCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAAT-TCATAAGGTA 470 consensus_6450#2 ACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGG 398 consensus_6450#1 TCTCCTTTGGTGA--AGTGTATGTACTAAATA-AATTTCAATCCTGTTTAACGCTCACAG 424 * * * ** * * * * ** * * * * * consensus_6450#0 TATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTC 530 consensus_6450#2 TATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTC 458 consensus_6450#1 TAGA-AACTTGAAGTAGAGCCGAAACA-AAACCAAT--CCCTCCTTTC-----TTAATTC 475 ** * *** *** * * * * **** * **** * * ** ** consensus_6450#0 CTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAAC 590 consensus_6450#2 CTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAAC 518 consensus_6450#1 TTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGAT 535 * * * *** ** * * ** * * ** ** * * * * consensus_6450#0 CTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTG 650 consensus_6450#2 TTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGA-GGTTAA-- 575 consensus_6450#1 TTCAGGGGAGGACTAAG-AACACAAATCGAACGACGTTTCATGGT--GAGGAGCTCGACA 592 * * * * * ** ** ** **** * ** ** * * * * * consensus_6450#0 TGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG 690 consensus_6450#2 ---------------------------------------- consensus_6450#1 TCCCCCCTTG------------------------------ 602 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||