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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1601 fasta sequence
[CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAGTGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA]
[+] EMBL AK073619 [CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAGTGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA]
consensusID : consensus_6451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1475 fasta sequence
[CAATCGCCATGGTGCAAGCCGCCTCAACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA-GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC-TGACCGAAATGGATTATTGTCACTGCTTTGCAC-ACCTGATG-TTGGATCAAAACTT-GGTGGAAGAGCCA-GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTC-AGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA]
[+] EMBL AK072322 [CAATCGCCATGGTGCAAGCCGCCTCAACCTCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC TGACCGAAATGGATTATTGTCACTGCTTTGCAC ACCTGATG TTGGATCAAAACTT GGTGGAAGAGCCA GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTC AGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA]
[+] EMBL C26260 [ ATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGANGCAATAAGTTTGTTTCTGATGCGCAT CGTTTACTTGACCGAAATGGATTATTGTCACTGCTTT CACAACCTGATGTTTGGA CAAAACTTGGGTGGAAGAGCCAGGTGC ]
[+] EMBL D43443 [ tnTGTTTGTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATTGTCAATGCCTTCAGCAACGCGA GCAATAAGTTTGTTTCTGATGCGCATGCGCTTAC TGACCGAAATGGATTATTGTCACTGCTTTGCAC ACCTGATG TTGGATCAAAACTT GGTGGAAGAGCCA GTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTNATGATATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGAAGCAGGTCAAGGTCAGAGTCCACATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6451#0 CTAGCTTGACTCGTGCGCCGCCTACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCGACC 60
consensus_6451#1 -------------------------------CAATCGCCATGGTGCAAGCCGCCTCAACC 29
************************* ***
consensus_6451#0 TCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCG 120
consensus_6451#1 TCCTCGCGCTTTCTCCGCACAACCCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCG 89
************************************************************
consensus_6451#0 GAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTC 180
consensus_6451#1 GAGCCCGCAGCCTCCGCGTAGCCGGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTC 149
************************************************************
consensus_6451#0 TCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTG 240
consensus_6451#1 TCTCTCGGATTTCAGGATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTG 209
************************************************************
consensus_6451#0 TACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATA 300
consensus_6451#1 TACAGAAGATATCCTCTCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATA 269
************************************************************
consensus_6451#0 TGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGT 360
consensus_6451#1 TGCAATTCAGGAGCTGGCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGT 329
************************************************************
consensus_6451#0 AAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTC 420
consensus_6451#1 AAAACCTTTTGGATCCTTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTC 389
************************************************************
consensus_6451#0 AGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCT 480
consensus_6451#1 AGTTGAGCTGTTCAATGCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCT 449
************************************************************
consensus_6451#0 GAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCC 540
consensus_6451#1 GAGAGAAGTAAGGAGAGCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCC 509
************************************************************
consensus_6451#0 TAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATAT 600
consensus_6451#1 TAATGCAAGAGTTCCAGTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATAT 569
************************************************************
consensus_6451#0 ATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTT 660
consensus_6451#1 ATCCATTAGCAATTACCCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTT 629
************************************************************
consensus_6451#0 GGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACAT 720
consensus_6451#1 GGATGATCGCTTTGGTGATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACAT 689
************************************************************
consensus_6451#0 TAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCA 780
consensus_6451#1 TAATGATCCAAAAAATGGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCA 749
************************************************************
consensus_6451#0 TTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACAT 840
consensus_6451#1 TTTTCAGACATGTGAACCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACAT 809
************************************************************
consensus_6451#0 CATGGAGGACATTTCAGATAAGATTTCATTATGGGAATATGGCTTACCTGTGATGGATAG 900
consensus_6451#1 CATGGAGGACATTTCAG------------------------------------------- 826
*****************
consensus_6451#0 TGACTATCTATTTGTCAGTGCCTTGCTGTTTAACTGCTGCATTCACATACAGGGAGGGCG 960
consensus_6451#1 ----------------------------------------------------GGAGGGCG 834
********
consensus_6451#0 TACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGC 1020
consensus_6451#1 TACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGCGC 894
************************************************************
consensus_6451#0 CAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCAC 1080
consensus_6451#1 CAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTCAC 954
************************************************************
consensus_6451#0 AAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTG 1140
consensus_6451#1 AAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGTTG 1014
************************************************************
consensus_6451#0 GAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGAT 1200
consensus_6451#1 GAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAGAT 1074
************************************************************
consensus_6451#0 CCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATT 1260
consensus_6451#1 CCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATATT 1134
************************************************************
consensus_6451#0 GTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGAC 1320
consensus_6451#1 GTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTGAC 1194
************************************************************
consensus_6451#0 CGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGA 1380
consensus_6451#1 CGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAAGA 1254
************************************************************
consensus_6451#0 GCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATAT 1440
consensus_6451#1 GCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGATAT 1314
************************************************************
consensus_6451#0 CTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGA 1500
consensus_6451#1 CTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAGGA 1374
************************************************************
consensus_6451#0 AGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTAC 1560
consensus_6451#1 AGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATTAC 1434
************************************************************
consensus_6451#0 CAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA 1601
consensus_6451#1 CAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCA 1475
*****************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||