These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1090 fasta sequence [AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCTCGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGCGCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAACGCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGGACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCTTTTATATATATAGGA] [+] EMBL AK111058 [AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCTCGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGCGCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAACGCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGGACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCTTTTATATATATAGGA] [+] EMBL C99506 [ CTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTG ] [+] EMBL C99505 [ GACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAAAAAAAAAaaaaaa ] consensusID : consensus_6468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [TTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTTC] [+] EMBL CF330399 [TTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6468#0 AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCT 60 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 CGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGC 120 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAAC 180 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCC 240 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 TGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACA 300 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCC 360 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGC 420 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 TCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGA 480 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 ATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCT 540 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGG 600 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 ACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAG 660 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 CCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCT 720 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 TCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACC 780 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 CAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAAC 840 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 CGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCG 900 consensus_6468#1 ------------------------------------------------------------ consensus_6468#0 GAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTT 960 consensus_6468#1 ---------------------------TTCTGGACTCTGGAGTTTAATTTTACACCTTTT 33 ********************************* consensus_6468#0 GCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTG 1020 consensus_6468#1 GCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 93 ************************** * * * * consensus_6468#0 CACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACT-----CCT 1075 consensus_6468#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCT 153 * *** *** **** * * * * * ** * *** consensus_6468#0 TTTATATATATAGGA 1090 consensus_6468#1 TTTTTTTC------- 161 *** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||