These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1536 fasta sequence [GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATAGCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAACCGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTCCCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGTCGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA] [+] EMBL AK101968 [GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATAGCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAACCGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTCCCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGTCGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATT ] [+] EMBL CF330415 [ CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGTTTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCATTATACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTT ] [-] EMBL CA759508 [ agacaagGGGGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTCCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA] consensusID : consensus_6469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [GGACGAGACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNGG] [+] EMBL CA764619 [GGACGAGACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6469#0 GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATA 60 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 GCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAAC 120 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTC 180 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGT 240 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGC 300 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTA 360 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAA 420 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 GGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCA 480 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 GCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATA 540 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 TTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAA 600 consensus_6469#1 ------------------------------------------------------GGACGA 6 ** * consensus_6469#0 TCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTAT 660 consensus_6469#1 GACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTAT 66 * *************************************************** consensus_6469#0 CGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGG 720 consensus_6469#1 CGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGG 126 ************************************************************ consensus_6469#0 TGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATAC 780 consensus_6469#1 TGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATAC 186 ************************************************************ consensus_6469#0 TCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTT 840 consensus_6469#1 TCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTT 246 ************************************************************ consensus_6469#0 CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCT 900 consensus_6469#1 CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCT 306 **************************************** ******************* consensus_6469#0 TGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAAC 960 consensus_6469#1 TGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAAC 366 ************************************************************ consensus_6469#0 ATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATT 1020 consensus_6469#1 ATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATT 426 ************************************************************ consensus_6469#0 CAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGT 1080 consensus_6469#1 CAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGT 486 ******** *************************************************** consensus_6469#0 TGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGT 1140 consensus_6469#1 TGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGT 546 ************************************************************ consensus_6469#0 AAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGT 1200 consensus_6469#1 AAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGT 606 ************************************************************ consensus_6469#0 GATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGC 1260 consensus_6469#1 GATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGC 666 ************************************************************ consensus_6469#0 GCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCT 1320 consensus_6469#1 GCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCT 726 ************************************************************ consensus_6469#0 GTGCGCATATGGTCATATATATGG-TTGTTAGACATGGTCATGTGTGCTTGTATGCAGTG 1379 consensus_6469#1 GTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNG 786 ************************ *** ***************************** * consensus_6469#0 GGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCC 1439 consensus_6469#1 G----------------------------------------------------------- 787 * consensus_6469#0 GTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCAC 1499 consensus_6469#1 ------------------------------------------------------------ consensus_6469#0 CGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA 1536 consensus_6469#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||