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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence
[ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCT-GCTTCGTC-TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC]
[+] EMBL AK069307 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCT GCTTCGTC TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC]
[+] EMBL AY164904 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATCGTCTTCCTCACCGTCT GCTTCGTC TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACT AACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTCGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATT ]
[+] EMBL C72898 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTNACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTG CAATCG TCATGGTCTTCC CACCGTCTGGNTTCGTCTTGGGCnat ]
consensusID : consensus_6476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[ATCTTATGACANTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTAAAAAAAAAAAAA]
[+] EMBL AU101192 [ATCTTATGACANTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6476#0 ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGC 60
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 ACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATC 120
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 ACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAG 180
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 GGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACC 240
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 TCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCTGCTTCGTCTGGGCCA 300
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 ATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAG 360
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 TCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACAT 420
consensus_6476#1 ------------------------------------------------------------
consensus_6476#0 TACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCT 480
consensus_6476#1 ------------------------------------ATCTTATGACANTTGCAGGCCTCT 24
*********** ************
consensus_6476#0 GGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCC 540
consensus_6476#1 GGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCC 84
********************* *********************************** **
consensus_6476#0 TGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGG 600
consensus_6476#1 TGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGG 144
************************************************************
consensus_6476#0 GCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCT 660
consensus_6476#1 GCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCT 204
************************************************************
consensus_6476#0 CAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAG 720
consensus_6476#1 CAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAG 264
************************************************************
consensus_6476#0 CCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGT 780
consensus_6476#1 CCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGT 324
************************************************************
consensus_6476#0 TTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCT 840
consensus_6476#1 TTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCT 384
************************************************************
consensus_6476#0 CGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGT 900
consensus_6476#1 CGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGT 444
************************************************************
consensus_6476#0 CACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTT 960
consensus_6476#1 CACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTT 504
************************************************************
consensus_6476#0 GGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGA 1020
consensus_6476#1 GGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGA 564
************************************************************
consensus_6476#0 GGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC 1073
consensus_6476#1 GGTA----AAAAAAAAAAAA--------------------------------- 580
**** ** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||