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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1629 fasta sequence
[AGCTTGGGCGAAGCCAAGCAGGCAAGCATCCATCATCCATGGCGCGCCGTTCAAAACCCTAAACCCTGAGGCGAACCTCGAGGAATCGCAGCGGCGCGTCGTGTCGGCACCCATGGCGGCGTCCCCGTCCGCTCCTCCTCCCCCCGCCGCCGCCGCTGGAGTCGGAGTCTGGAGCCCTGCTCCGCAATCGCCGTCGCCCAACCTCGCTAACTTCTTCGTATGGAGGGAATTTGTATGGGGAGCAATTGCAGGCGCATTCGGTGAAGGCATGATGCATCCAGTCGATACTCTGAAAACACGGCTTCAGAGTCAGGCTATAATCACAGGGGCTAAGGCTCAGAAAAATATATTCCAGATGATCAGGACAGTCTGGGTCTCTGATGGTCTGAAAGGTTTTTACAGAGGAATCAGTCCAGGTGTTACTGGATCACTTGCTACAGGGGCAACATATTTTGGTGTTATTGAATCAACCAAGACATGGCTGGAGCATTCTAATCCTAATCTAAGTGGCCATTGGTCTCACTTTATTGCTGGAGGAATTGGAGATACACTTGGGTCTTTTATCTATGTGCCATGTGAAGTCATGAAACAGCGAATGCAAGTCCAAGGCACCAAGAAATCTTGGGCCTTAACTGCCACAAAAGGAAATATTTCTCAAACTCCAGGGGCTCCGATGTATAACTACTATAATGGAATGTTCCATGCTGGTTGTTCTATCTGGAGAGATCATGGTCTGAAGGGACTTTATGCAGGATACTGGTCTACACTTGCCAGGGATGTACCTTTTGCTGGTCTTATGGTCACTTTCTATGAGGCAATGAAAGAACTGACTGAGTATGGGAAGAGGAAGTATTTGCCAGAGAGTAATTTGCATGCTAGCAGCTCCTTCGAAGGTCTTCTTCTAGGAGGCTTGGCAGGCGGTTTTAGTGCATACTTGACAACCCCCTTGGATGTGATCAAGACAAGGCTGCAAGTACAGGGATCAACAACTAGTTACAATGGGTGGCTGGATGCTATTACGAAGACATGGGCTAATGAGGGAATGAGTGGCTTGTTCAAGGGGAGCATTCCTAGAATAATATGGTACATACCTGCATCTGCATTCACGTTCATGGCAGTGGAGTTCCTCAGGGATCATTTCAACGAAAAGATCGATACAGATGCCCGTGAACTAACCGGCCTGTCAATGGACACAAGATCAGAAGTTGAGGAAGCTGCATGAAGCCCTGAAGGCCTGAAGTAGTTCCCTGTTTTGTAGGACTGATCCAGAGGAATTTCTGATTTCTCCGTCAAGTAAAGTTCATTTCACGAATATAAGTGTGAAAAATGCAATGTCAGCCAAGTTTCAACGTTTACAAGCGTAGAAGAGATAAGGAAACTGATCATCCTTCATCTACTCAGTATTTTTTTGGGGGTGTTGGAAACCAGGATTGTTGGTGGGCAGTAGTTCTTCTGGGTCTTCAAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATTCCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAGTTCTTTTTTTTATTATTATTTTTAATGAACGAGCCGGCACTAGAATGTATCAATTCCATTGAATAGAGCACGA]
[+] EMBL AK103114 [AGCTTGGGCGAAGCCAAGCAGGCAAGCATCCATCATCCATGGCGCGCCGTTCAAAACCCTAAACCCTGAGGCGAACCTCGAGGAATCGCAGCGGCGCGTCGTGTCGGCACCCATGGCGGCGTCCCCGTCCGCTCCTCCTCCCCCCGCCGCCGCCGCTGGAGTCGGAGTCTGGAGCCCTGCTCCGCAATCGCCGTCGCCCAACCTCGCTAACTTCTTCGTATGGAGGGAATTTGTATGGGGAGCAATTGCAGGCGCATTCGGTGAAGGCATGATGCATCCAGTCGATACTCTGAAAACACGGCTTCAGAGTCAGGCTATAATCACAGGGGCTAAGGCTCAGAAAAATATATTCCAGATGATCAGGACAGTCTGGGTCTCTGATGGTCTGAAAGGTTTTTACAGAGGAATCAGTCCAGGTGTTACTGGATCACTTGCTACAGGGGCAACATATTTTGGTGTTATTGAATCAACCAAGACATGGCTGGAGCATTCTAATCCTAATCTAAGTGGCCATTGGTCTCACTTTATTGCTGGAGGAATTGGAGATACACTTGGGTCTTTTATCTATGTGCCATGTGAAGTCATGAAACAGCGAATGCAAGTCCAAGGCACCAAGAAATCTTGGGCCTTAACTGCCACAAAAGGAAATATTTCTCAAACTCCAGGGGCTCCGATGTATAACTACTATAATGGAATGTTCCATGCTGGTTGTTCTATCTGGAGAGATCATGGTCTGAAGGGACTTTATGCAGGATACTGGTCTACACTTGCCAGGGATGTACCTTTTGCTGGTCTTATGGTCACTTTCTATGAGGCAATGAAAGAACTGACTGAGTATGGGAAGAGGAAGTATTTGCCAGAGAGTAATTTGCATGCTAGCAGCTCCTTCGAAGGTCTTCTTCTAGGAGGCTTGGCAGGCGGTTTTAGTGCATACTTGACAACCCCCTTGGATGTGATCAAGACAAGGCTGCAAGTACAGGGATCAACAACTAGTTACAATGGGTGGCTGGATGCTATTACGAAGACATGGGCTAATGAGGGAATGAGTGGCTTGTTCAAGGGGAGCATTCCTAGAATAATATGGTACATACCTGCATCTGCATTCACGTTCATGGCAGTGGAGTTCCTCAGGGATCATTTCAACGAAAAGATCGATACAGATGCCCGTGAACTAACCGGCCTGTCAATGGACACAAGATCAGAAGTTGAGGAAGCTGCATGAAGCCCTGAAGGCCTGAAGTAGTTCCCTGTTTTGTAGGACTGATCCAGAGGAATTTCTGATTTCTCCGTCAAGTAAAGTTCATTTCACGAATATAAGTGTGAAAAATGCAATGTCAGCCAAGTTTCAACGTTTACAAGCGTAGAAGAGATAAGGAAACTGATCATCCTTCATCTACTCAGTATTTTTTTGGGGGTGTTGGAAACCAGGATTGTTGGTGGGCAGTAGTTCTTCTGGGTCTTCAAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATTCCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAGTTCTTTTTTTTATTATTATTTTTAATGAACGAGCCGGCACTAGAATGTATCAATTCCATTGAATAGAGCACGA]
[+] EMBL AY224505 [ CAGCGAATGCAAGTCCAAGGCACCAAGAAATCTTGGGCCTTAACTGCCACAAAAGGAAATATTTCTCAAACTCCAGGGGCTCCGATGTATAACTACTATAATGGAATGTTCCATGCTGGTTGTTCTATCTGGAGAGATCATGGTCTGAAGGGACTTTATGCAGGATACTGGTCTACACTTGCCAGGGATGTACCTTTTGCTGGTCTTATGGTCACTTTCTATGAGGCAATGAAAGAACTGACTGAGTATGGGAAGAGGAAGTATTTGCCAGAGAGTAATTTGCATGCTAGCAGCTCCTTCGAAGGGCTTCTTCTAGGAGGCTTGGCAGGCGGTTTTAGTGCATACTTGACAACCCCCTTGGATGTGATCAAGACAAGGCTGCAAGTACAGGGATCAACAACTAGTTACAATGGGTGGCTGGATGCTATTACGAAGACATGGGCTAATGAGGGAATGAGTGGCTTGTTCAAGGGGAGCATTCCTAGAATAATATGGTACATACCTGCATCTGCATTCACGTTCATGGCAGTGGAGTTCCTCAGGGATCATTTCAACGAAAAGATCGATACAGATGCCCGTGAACTAACCGGCCTGTCAATGGACACAAGATCAGAAGTTGAG ]
consensusID : consensus_6478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence
[TTCTGGGTCTTAAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATTCCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAAAAAAAAAAAAAAAAAAAAAACACTGAAATGCCAGAAACAAAACAATAT]
[+] EMBL CF313121 [TTCTGGGTCTTAAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATTCCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAAAAAAAAAAAAAAAAAAAAAACACTGAAATGCCAGAAACAAAACAATAT]
consensusID : consensus_6478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTGTTCTTTTGGTTTGGAATTTGGGGTGCATTAGTTAGGTTCCAAACATGGGCTTTGAAGACCCAGAAAAACTACTGTTTCTACTCCTTCAATCCAT]
[+] EMBL CF313120 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTGTTCTTTTGGTTTGGAATTTGGGGTGCATTAGTTAGGTTCCAAACATGGGCTTTGAAGACCCAGAAAAACTACTGTTTCTACTCCTTCAATCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6478#0 AGCTTGGGCGAAGCCAAGCAGGCAAGCATCCATCATCCATGGCGCGCCGTTCAAAACCCT 60
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 AAACCCTGAGGCGAACCTCGAGGAATCGCAGCGGCGCGTCGTGTCGGCACCCATGGCGGC 120
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GTCCCCGTCCGCTCCTCCTCCCCCCGCCGCCGCCGCTGGAGTCGGAGTCTGGAGCCCTGC 180
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TCCGCAATCGCCGTCGCCCAACCTCGCTAACTTCTTCGTATGGAGGGAATTTGTATGGGG 240
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 AGCAATTGCAGGCGCATTCGGTGAAGGCATGATGCATCCAGTCGATACTCTGAAAACACG 300
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GCTTCAGAGTCAGGCTATAATCACAGGGGCTAAGGCTCAGAAAAATATATTCCAGATGAT 360
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 CAGGACAGTCTGGGTCTCTGATGGTCTGAAAGGTTTTTACAGAGGAATCAGTCCAGGTGT 420
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TACTGGATCACTTGCTACAGGGGCAACATATTTTGGTGTTATTGAATCAACCAAGACATG 480
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GCTGGAGCATTCTAATCCTAATCTAAGTGGCCATTGGTCTCACTTTATTGCTGGAGGAAT 540
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TGGAGATACACTTGGGTCTTTTATCTATGTGCCATGTGAAGTCATGAAACAGCGAATGCA 600
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 AGTCCAAGGCACCAAGAAATCTTGGGCCTTAACTGCCACAAAAGGAAATATTTCTCAAAC 660
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TCCAGGGGCTCCGATGTATAACTACTATAATGGAATGTTCCATGCTGGTTGTTCTATCTG 720
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GAGAGATCATGGTCTGAAGGGACTTTATGCAGGATACTGGTCTACACTTGCCAGGGATGT 780
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 ACCTTTTGCTGGTCTTATGGTCACTTTCTATGAGGCAATGAAAGAACTGACTGAGTATGG 840
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GAAGAGGAAGTATTTGCCAGAGAGTAATTTGCATGCTAGCAGCTCCTTCGAAGGTCTTCT 900
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TCTAGGAGGCTTGGCAGGCGGTTTTAGTGCATACTTGACAACCCCCTTGGATGTGATCAA 960
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GACAAGGCTGCAAGTACAGGGATCAACAACTAGTTACAATGGGTGGCTGGATGCTATTAC 1020
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GAAGACATGGGCTAATGAGGGAATGAGTGGCTTGTTCAAGGGGAGCATTCCTAGAATAAT 1080
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 ATGGTACATACCTGCATCTGCATTCACGTTCATGGCAGTGGAGTTCCTCAGGGATCATTT 1140
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 CAACGAAAAGATCGATACAGATGCCCGTGAACTAACCGGCCTGTCAATGGACACAAGATC 1200
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 AGAAGTTGAGGAAGCTGCATGAAGCCCTGAAGGCCTGAAGTAGTTCCCTGTTTTGTAGGA 1260
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 CTGATCCAGAGGAATTTCTGATTTCTCCGTCAAGTAAAGTTCATTTCACGAATATAAGTG 1320
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 TGAAAAATGCAATGTCAGCCAAGTTTCAACGTTTACAAGCGTAGAAGAGATAAGGAAACT 1380
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GATCATCCTTCATCTACTCAGTATTTTTTTGGGGGTGTTGGAAACCAGGATTGTTGGTGG 1440
consensus_6478#1 ------------------------------------------------------------
consensus_6478#2 ------------------------------------------------------------
consensus_6478#0 GCAGTAGTTCTTCTGGGTCTTCAAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATT 1500
consensus_6478#1 ----------TTCTGGGTCTT-AAAGCCCATGTTTGGACCTAACTGATGCACCCCAAATT 49
consensus_6478#2 ---------------------------------------TTTTTTTTTTTTTTTTTTTTT 21
* * * **
consensus_6478#0 CCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAGTTCT 1560
consensus_6478#1 CCATACCATATGTACCTTCCAACATTTTGTTCTATCCAAATGCAATTACAACGTAAAAAA 109
consensus_6478#2 TTTTTTTTTTTTTTTTTCTTTTTTTTTTGTTCTTTTGGTTTGGAATTTGGGGTGCATTAG 81
* * * * * ********* * ** ****
consensus_6478#0 TTTTTTTATTATTATTTTTAATGAACGAGCCGGCACTAGAATGTATCAATTCCATTGAAT 1620
consensus_6478#1 AAAAAAAAAAAAAAAA--CACTGAAATGCCAGAAACAAAACAATAT-------------- 153
consensus_6478#2 TTAGGTTCCAAACATGGGCTTTGAAGACCCAGAAAAACTACTGTTTCTACTCCTTCAATC 141
* * **** * * * * * *
consensus_6478#0 AGAGCACGA 1629
consensus_6478#1 ---------
consensus_6478#2 CAT------ 144
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||