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Oryza sativa
cluster # 6479 cluster # 6479       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6479#0 length = 961 sequences # 2  
consensus_6479#1 length = 765 sequences # 1  
consensus_6479#2 length = 372 sequences # 1  

consensusID : consensus_6479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 961
fasta sequence
                              [GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG]

[-] EMBL AK105588             [GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATT                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB676401             [                                                                                                                                                                                                   GACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG]


>consensus_6479#0 GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCA AAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCAT GTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGC ACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAA GCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGC AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG CGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCT CACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCT CCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCAT G



consensusID : consensus_6479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA]

[+] EMBL CB671630             [TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA]


>consensus_6479#1 TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTT AGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTAC AACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTA CATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCA TTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAG TTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGAT GGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGA ACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAA TTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGA GCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCA GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACT TGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA



consensusID : consensus_6479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence
                              [CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT]

[+] EMBL CF330618             [CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT]


>consensus_6479#2 CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAT CAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACAC AATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAA TTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAG TATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGA TCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCG GATGTACATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6479#0      GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCA 60
consensus_6479#1      ------------------------------------------------------------
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      AAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCAT 120
consensus_6479#1      ------------------------------------------------------------
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      GTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGC 180
consensus_6479#1      ------------------------------------------------------------
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      ACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAA 240
consensus_6479#1      ------------------------------------------------TCTTTTTTTGT- 11
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      GCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGC 300
consensus_6479#1      ------TTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGC 65
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 360
consensus_6479#1      AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 125
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 420
consensus_6479#1      AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 185
consensus_6479#2      -------------------------------------------------CCGG--CATGA 9
                                                                       * **  ***  

consensus_6479#0      TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 480
consensus_6479#1      TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 245
consensus_6479#2      CAGTGTTTTTTTTTTTTTTTTTT-------TTTTTT------------TTTTTTTTTTTT 50
                       **** *    ******  ** *       *   **                   ** * 

consensus_6479#0      TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 540
consensus_6479#1      TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 305
consensus_6479#2      TTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCAC------TGGCACTTTTAC 104
                      *  ***   * *   * **     **     ** * ***  *      **  *  ***  

consensus_6479#0      AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 600
consensus_6479#1      AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 365
consensus_6479#2      TATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAG-----GG 159
                        *    ** *** *  *   ** ***  ****      * *  **  *   *     **

consensus_6479#0      TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 660
consensus_6479#1      TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 425
consensus_6479#2      CTCATC---ATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGAT-GG 215
                       * **     **    **    ** * ** *  ** *  * **  *         *  **

consensus_6479#0      AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 720
consensus_6479#1      AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 485
consensus_6479#2      CACATTATTTTTCTTACTCT-GACAGTATATGGGATGAATAT-CCCAACAACTGCCCCCC 273
                       *  * *  * *     *** **  * * *    *** **    *  ** *      ***

consensus_6479#0      AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 780
consensus_6479#1      AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 545
consensus_6479#2      ACCCAAAAAAAACCGAAACCACATTGATCCCTCT-ACTCGACATTCTGTTCTTGAAACTA 332
                      *   * * *   *  *  *  *   **    *   *  *  * *   * * * **     

consensus_6479#0      CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 835
consensus_6479#1      CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 600
consensus_6479#2      TGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT-------------------- 372
                       ***  *    *  ***  ** * *  **    *******                    

consensus_6479#0      GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 895
consensus_6479#1      GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 660
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACT 955
consensus_6479#1      TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACT 720
consensus_6479#2      ------------------------------------------------------------
                                                                                  

consensus_6479#0      TGCATG--------------------------------------- 961
consensus_6479#1      TGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA 765
consensus_6479#2      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)