These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence [GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG] [-] EMBL AK105588 [GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATT ] [+] EMBL CB676401 [ GACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG] consensusID : consensus_6479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA] [+] EMBL CB671630 [TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA] consensusID : consensus_6479#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT] [+] EMBL CF330618 [CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6479#0 GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCA 60 consensus_6479#1 ------------------------------------------------------------ consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 AAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCAT 120 consensus_6479#1 ------------------------------------------------------------ consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 GTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGC 180 consensus_6479#1 ------------------------------------------------------------ consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 ACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAA 240 consensus_6479#1 ------------------------------------------------TCTTTTTTTGT- 11 consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 GCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGC 300 consensus_6479#1 ------TTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGC 65 consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 360 consensus_6479#1 AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 125 consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 420 consensus_6479#1 AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 185 consensus_6479#2 -------------------------------------------------CCGG--CATGA 9 * ** *** consensus_6479#0 TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 480 consensus_6479#1 TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 245 consensus_6479#2 CAGTGTTTTTTTTTTTTTTTTTT-------TTTTTT------------TTTTTTTTTTTT 50 **** * ****** ** * * ** ** * consensus_6479#0 TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 540 consensus_6479#1 TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 305 consensus_6479#2 TTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCAC------TGGCACTTTTAC 104 * *** * * * ** ** ** * *** * ** * *** consensus_6479#0 AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 600 consensus_6479#1 AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 365 consensus_6479#2 TATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAG-----GG 159 * ** *** * * ** *** **** * * ** * * ** consensus_6479#0 TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 660 consensus_6479#1 TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 425 consensus_6479#2 CTCATC---ATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGAT-GG 215 * ** ** ** ** * ** * ** * * ** * * ** consensus_6479#0 AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 720 consensus_6479#1 AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 485 consensus_6479#2 CACATTATTTTTCTTACTCT-GACAGTATATGGGATGAATAT-CCCAACAACTGCCCCCC 273 * * * * * *** ** * * * *** ** * ** * *** consensus_6479#0 AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 780 consensus_6479#1 AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 545 consensus_6479#2 ACCCAAAAAAAACCGAAACCACATTGATCCCTCT-ACTCGACATTCTGTTCTTGAAACTA 332 * * * * * * * * ** * * * * * * * * ** consensus_6479#0 CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 835 consensus_6479#1 CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 600 consensus_6479#2 TGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT-------------------- 372 *** * * *** ** * * ** ******* consensus_6479#0 GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 895 consensus_6479#1 GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 660 consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACT 955 consensus_6479#1 TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACT 720 consensus_6479#2 ------------------------------------------------------------ consensus_6479#0 TGCATG--------------------------------------- 961 consensus_6479#1 TGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA 765 consensus_6479#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||