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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 865 fasta sequence
[CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAGAAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGCCGCCGCCGGCGCCGGTGAAGAAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACCCTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTGGCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCGGCGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGCGTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATCGTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCGGCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGCTGTCTCGCTCGTCATGGTGTTCACGTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGTGTGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTTTGTTTGGTTGTTTTGTTTTTCTCTCGTAAGGTCTACAGATGTGACATGAAAGTTAATTTCTTGATGTCATCTTGGCTTGGAATCTATTACTAGTGGTGTCTGTCAAACTGTAATTGTATAGCATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGTTTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA]
[+] EMBL AK107848 [CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAGAAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGCCGCCGCCGGCGCCGGTGAAGAAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACCCTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTGGCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCGGCGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGCGTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATCGTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCGGCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGCTGTCTCGCTCGTCATGGTGTTCACGTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGTGTGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTTTGTTTGGTTGTTTTGTTTTTCTCTCGTAAGGTCTACAGATGTGACATGAAAGTTAATTTCTTGATGTCATCTTGGCTTGGAATCTATTACTAGTGGTGTCTGTCAAACTGTAATTGTATAGCATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGTTTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA]
consensusID : consensus_6481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence
[ATTGCCAAATATCTCGCTATCAGCTATGGACATGGGAGGGCACGACATGGGCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCATGAAGTCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACCATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTGGCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCGCGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGCGTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCCGTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCCCCGCGCAGGTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTAGCCGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTTGATGCTTGCATGTGTTTGTGTAATTGTGTATATTGTTCGCGGTCGGTTGGATGAGTTGTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAAAGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTGCCGTGAAACTGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAAA]
[+] EMBL CB661145 [ATTGCCAAATATCTCGCTATCAGCTATGGACATGGGAGGGCACGACATGGGCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCATGAAGTCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACCATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTGGCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCGCGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGCGTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCCGTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCCCCGCGCAGGTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTAGCCGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTTGATGCTTGCATGTGTTTGTGTAATTGTGTATATTGTTCGCGGTCGGTTGGATGAGTTGTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAAAGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTGCCGTGAAACTGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATA ]
[+] EMBL CF330642 [ CGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAA ]
[-] EMBL CF330641 [ GTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6481#0 CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAG 60
consensus_6481#1 ---ATTGCCAAATATCTCGCTATCAGCTATGGACA------TGGGAGGGCACGACA-TGG 50
** * * * *** ** * **** ** ** ** ** * * * *
consensus_6481#0 AAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGC-CGCCGCCGGCGCCGGTGAAG 119
consensus_6481#1 GCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCA-TGAAG 109
* **** * * * ** **** ** * ** * ****** *****
consensus_6481#0 AAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACC 179
consensus_6481#1 TCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACC 169
* * ****** **************************** *****************
consensus_6481#0 CTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTG 239
consensus_6481#1 ATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTG 229
******* *** * ***** ************** *** ** ***** * *********
consensus_6481#0 GCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCG------G 293
consensus_6481#1 GCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCG 289
***** ** ********* **** **** * *** ** ******** *
consensus_6481#0 CGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGC 353
consensus_6481#1 CGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGC 349
******** *** ***** ** * **** ******* *** * ************
consensus_6481#0 GTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATC 413
consensus_6481#1 GTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCC 409
** ** ***** ****************************************** * *
consensus_6481#0 GTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCG 473
consensus_6481#1 GTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGC---CCC 466
** ** ** ******** ** ********************************* **
consensus_6481#0 GCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGC 533
consensus_6481#1 GCGCAG---GTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTA--------GC 515
**** * ************************* * *********** **
consensus_6481#0 TGTCTCGCTCGTCATGGTGTTCAC-GTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGT 592
consensus_6481#1 CGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTT 575
* **** ****** ** *** * * * ** * ** ** ** *
consensus_6481#0 G-TGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTT 651
consensus_6481#1 GATGCTTGCATGTGTTT-GTGTAATTGTGTATATTGT--TCGCGGTCGGTTGGATGAGTT 632
* *** ** **** ** **** *** * ****** ** *****
consensus_6481#0 TGTTTGGTTGTTTTGTTTTTCTCT-------CGTAAGGTCTACAGATGTGACATGAAAGT 704
consensus_6481#1 -GTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAA- 690
****** ** *** *** *** *** ** * * * ***********
consensus_6481#0 TAATTTCTTGATG--TCATCTT--GGCTTGGAATCT-ATTACTAGTGGTGTCTGTCAAAC 759
consensus_6481#1 -AGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTG-CCGTGAAAC 748
* ** ***** ***** *** ***** * * * **** * ** ****
consensus_6481#0 TGTAATTGTATAGC-----ATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGT 814
consensus_6481#1 TGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAAT 808
****** ** * ** * ***** *** ******* * * ** **** ** *
consensus_6481#0 TTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA 865
consensus_6481#1 TTCAATTCTAATAAATTGATTATGGT-GCGCTTATGTAAAAAAA------- 851
******* * * **** **** * * * ** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||