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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1871 fasta sequence
[ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGCGACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAATCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCTCGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGGCTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAATAATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTGTAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTACTGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTAGGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAGACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAGTGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTATAGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGACCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGACCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGAGGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAAAAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCCACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAGAGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACTACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGGTTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTCCTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGACAGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGC-AGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTC-AATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCG-TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAAAAATTTAGTGAATTGCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTTACGTACCGTAT]
[+] EMBL AK106689 [ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGCGACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAATCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCTCGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGGCTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAATAATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTGTAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTACTGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTAGGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAGACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAGTGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTATAGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGACCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGACCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGAGGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAAAAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCCACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAGAGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACTACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGGTTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTCCTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGACAGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGC AGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTC AATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCG TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAAT ]
[+] EMBL BI813607 [ gagcGTCTAAC TCGAGTCGGATTTCTTGACCCAGATCCAAGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCAAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTCAAATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCGTTTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATC ACATGGCTAATTTAATCAAAAAA ]
[+] EMBL CF330665 [ AAGACCTAAAGCG TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAGTATTTTAGTGAATTGCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTTACGTACCGTAT]
consensusID : consensus_6482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[ATGGATTGAAGGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCTAAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAGGTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF330664 [ATGGATTGAAGGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCTAAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAGGTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6482#0 ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGC 60
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 GACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAA 120
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 TCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCT 180
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGG 240
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAAT 300
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTG 360
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 TAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTAC 420
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 TGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTA 480
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 GGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAG 540
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 ACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAG 600
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 TGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTAT 660
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGA 720
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGA 780
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGA 840
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 GGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAA 900
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCC 960
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 ACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAG 1020
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACT 1080
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 ACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGG 1140
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 TTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTC 1200
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGAC 1260
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGCAGAATTTGCACCCTTCAGAGCCAC 1320
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 CTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAG 1380
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 GTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACA 1440
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 ACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCT 1500
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 AGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAA 1560
consensus_6482#1 ------------------------------------------------------------
consensus_6482#0 ACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACG 1620
consensus_6482#1 --------------------------------------------------ATGGATTGAA 10
** *
consensus_6482#0 TCAATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCT 1680
consensus_6482#1 GGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCT 70
* ** * ************************************* *** ***** ***
consensus_6482#0 AAAGCGTTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGAT 1740
consensus_6482#1 AAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAG 130
**** ******************* ***************** ************ ***
consensus_6482#0 GCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAAAAATTTAGTGAATT 1800
consensus_6482#1 GTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATT 190
* ******* * ******************** ************ * * ********
consensus_6482#0 GCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTT 1860
consensus_6482#1 GCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 223
****** ************************
consensus_6482#0 ACGTACCGTAT 1871
consensus_6482#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||