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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1334 fasta sequence
[CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAATCAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGTCCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGCCCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGATTCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGACGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGAGGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGAGCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTTCAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCTACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCAGCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTCGGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGATCTATGAGCATAAGGTTGATAATGTTGCCAAGAACACACCAACGAAATTTAAGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAAA]
[+] EMBL AK066642 [CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAATCAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGTCCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGCCCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGATTCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGACGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGAGGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGAGCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTTCAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCTACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCAGCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTCGGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGATCTATGAGCATAAGGTTGATAATGTTGCCAAGAACACACCAACGAAATTTAAGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCGAATTGCAAAAGGTTTT ]
[-] EMBL CF330683 [ AGGTCTTGCCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACCTGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAAA]
[+] EMBL CF330684 [ TAGCAAATTTATCAAAAGGATGAGGAGCGATGGTTGAGGCCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTGCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTACATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATACCAAACCAATTAAAAAAA ]
consensusID : consensus_6483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence
[NNNNNNTNNTCGGCCGAGCTCGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTGCCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANCTGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTTGGAAATCTTACCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCCNNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGATCNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGNCCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTNNNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNCNANNNNGNAANTNNTTNNNGCNTNTNNNN]
[+] EMBL BE229844 [NNNNNNTNNTCGGCCGAGCTCGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTGCCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATGAGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATGGTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCTTTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTCTGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANCTGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTTGGAAATCTTACCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCCNNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGATCNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGNCCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTNNNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNCNANNNNGNAANTNNTTNNNGCNTNTNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6483#0 CAGAAGTCCAGAATCGAATAAGTAAAAGACAAAATCAAAAATTCAGACCAAAAAAAAAAT 60
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 CAGAGAAATGAAAAGAGGCTGAGCAACAACTCACCTCACGGCGGCAATGGGCCTCCTCGT 120
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 CCACCTCCCCAACCTCGCCGGCGCCCGCCGCCCATCGCCGTGCGGCGGCCACCGGAGGGC 180
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 CCGCGGCGGCGCGCGGTTCTCGGTGTCCGCCGCGGCGCCCGGCGGGGGCGTCAAGGAGGA 240
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 AGAGGAAGAGGAAGAGGAGGAGGAGGAGAAGGGGACGAGGGGGAAGGAGAGAATAGTGAT 300
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 TCGGGTGTCGGACCCGGTGCGGGAGAGGCGGCTCCCGCCGCCGCTCTTCTCGTCCCCGGA 360
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 CGCCCCCTCGCCGGCGGCGGGGCGGCGGCGGAGGAAGGGGGAGGACGAGGACGACGGGGA 420
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 GGACCGGCGGCGGCGGTACCACGTCAACGTCGGGGACGCCATCCGGGCGCTGCGGGAGGA 480
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 GCTCCCCGCCGCGTTCTACCGGGAGCCCAGCTTCCATATCTACAGAGATGATATTGTCTT 540
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 CAAAGATCCTATCAATAATTTCACGGGTATTGATAACTACAAAAGGATATTCTGGGCTCT 600
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 ACGGTTTACTGGGCAAATTTTCTTCAAAGCACTATGGATCGACATTATCAGCATATGGCA 660
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 GCCTGTCGAGGATGTAATCATGATCCGCTGGATTGTCCATGGCATTCCTAGAGTTCTCTC 720
consensus_6483#1 ------------------------------------------------------------
consensus_6483#0 GGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAGAT 780
consensus_6483#1 ------------------------------------------NNNNNNTNNTCGGCCGAG 18
* ** **
consensus_6483#0 CTATGAGCATAAGGTTG-ATAATGTTGCCAAGAA-CACACCAACGAAATTTAAGGTCTTG 838
consensus_6483#1 CT-CGTGCCGAATTCGGCACGANGTTGCCAAGAAACACACCAACGAAATTTTNGGTCTTG 77
** * ** ** * * * *********** **************** *******
consensus_6483#0 CCAGTCGTAGAGCTCATCAGATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTT 898
consensus_6483#1 CCAGTCGTAGAGCTCATCAGATCNCTTGGATGCCCATCTACTCCAAAACCAACATATTTT 137
*********************** ************************************
consensus_6483#0 GAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATG 958
consensus_6483#1 GAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCTGGTTCAAATTGACTTGGATG 197
************************************************************
consensus_6483#0 AGATGCTACTTGTCATTGTACCTTATCCTAGCAAATTTATCAAAAGGATGAGGATCGATG 1018
consensus_6483#1 AGATGCTACTTGTCATTGTACCTTATCCTACCAAATTTATCAAAAGGATGAGGATCGATG 257
****************************** *****************************
consensus_6483#0 GTTGAGGTCCAACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCT 1078
consensus_6483#1 GTTGAGGTCCNACCCAATGCCTCTAAATTTTGCCCTTCCATTGTATGGTAGTGTATACCT 317
********** *************************************************
consensus_6483#0 TTGAGCAGCTCGCCAATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTC 1138
consensus_6483#1 TTGAGCAGCTCGCCNATACCTACATGTAAACGATTTTGTTTGTGTACAGCTCAAAGTTTC 377
************** *********************************************
consensus_6483#0 TGTCTAGGAATGTAGGCATAGCTG-AAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGC 1197
consensus_6483#1 TGTCTANGAATGTTGGCNTTTNTNTNATTTNTTCCAANATCTNGGCTGANTTTTGTAANC 437
****** ****** *** * * * ** ****** **** ****** ******** *
consensus_6483#0 TGTATATT-GCCCCCTACCTGGGTATGTAATCAACAGACGAGGCAAGTAAGGAAATCTTA 1256
consensus_6483#1 TGTATNTTCGCCCCCTNCCTGGGTTTGTTNTCNACANACAAAGCNAGTT-GGAAATCTTA 496
***** ** ******* ******* *** ** *** ** * ** *** **********
consensus_6483#0 CATGCTTGCACGTTGCCTGATACTGAACTTTTTGCTATCTAATTGCAAAAGGTTTTATAC 1316
consensus_6483#1 CCTGCTTGCACNTTGCCTGATACTGAACTTTTTGCTNTCNAATTGCNANAGGTNTGGTCC 556
* ********* ************************ ** ****** * **** * * *
consensus_6483#0 CAAACCAATTAAAAAAAA------------------------------------------ 1334
consensus_6483#1 NNNNNNANANNNNNNNNNNNCTCNAGGGGGGGCCGGTCCCCNNTTCCCCCGATNNTGGAT 616
*
consensus_6483#0 ------------------------------------------------------------
consensus_6483#1 CNTNTTNNAANACNNTNGGNCNGNCNTNTNTNNNAANTNCNTNNCTGGGGANNANCCNGN 676
consensus_6483#0 ------------------------------------------------------------
consensus_6483#1 CCTTNNCCCNANCTTNNCGCCTNNGNNNNNANNNCCCCCTTTCNGCCNGNTGGGTTNNTN 736
consensus_6483#0 ------------------------------------------------------------
consensus_6483#1 NNCNNAANAGGNCCNNNNCCNNNTNGCCCTTCCCNANNNNTNNNGCNNCCCCTANTGNNC 796
consensus_6483#0 -----------------------------
consensus_6483#1 NANNNNGNAANTNNTTNNNGCNTNTNNNN 825
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||