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Oryza sativa
cluster # 6486 cluster # 6486       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6486#0 length = 1704 sequences # 4  

consensusID : consensus_6486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1704
fasta sequence
                              [TGCTTTAATTTATTTACCTTACATTTTGCTACTCACATAAACTTTGTTCCAGAAACATTGTTTGAAAATATGGTGATTTTTTTAACTATTGTTGATAAAAACTTGGTGCTGTTATGGACCTGGCCTGATCTGTGGTGGCGAATGAGTGAGGGGATGGCATCACTCTATATATGCGAAAAGCCGAAAACAGCCATGTGTTCTGCTCTTTGTTCCTTTTTGTTTAAGTTTTGTTGCTGGGATAACACTTTGTAGCCTGCCTCTCATGAATCATGATGGAAATGGAAGGGGTCTCCCTCTTCTGGCTATAATACATTTGCTTCTCAAATATTACAGTACATTTCTAAAGGAAAGAAAAAAAAAGATATGGTAAATTGAAACTTCCATGCCTTTTTCCATATCTATTTATAGGTTTTGCACGTGTTGTCCAAATGTGATCCTTTATAGAGGTCACACCTTTATCCAGGTTTCTTATCCGAGCTAATCGAAATCCAAGAACAAAAATACTACTGTGGCAAAAAAGAATAAGGAAGAACATAAGGAACTCCCACATGTCCAAAAATGGAAGCAATTAGTTTGGTTTCAATACAGGCCACAAAAGAAATGGTCAGCTCAACTCCTACGGTTGAGGCTCACACCTCATTCACCCTGTCCTGAGCAATCCTTTTTAGGCTCCTTCCTGCAAGGCTGCAACTATATAGGCCGATGAGGACAGAAGGGGGAAAAAACACAGGCGCATTCTACCGAGAGGCACAGGGGTTGCAAGAAGTCGCCTAATTCTCCTATTGAATTAGGCACATCTTCGCCCCCACATTGCCTCTCATTGTAAAATAGTATCAACTGATAATCCACAGGAACTAAACAACAATTAAATCCAATTATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACA-TTTCCGAATGCCAAAACATATATTGTGCGAAATGGATCATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCATGTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGC-AAAGGGTTCATCAGGTTAGTCAATGTCTGTAGGAAAGGAAAATGATGTTAAAATGTTGTTG-CCGAAATGTATTGGGAGCATGATCAGTAAAGCTTGGGATGACATAATCAAATAGTACAAACGATAGGACCATGTTTGCCTGTGCTTTTGCAACAAATCAATCACAAAT]

[+] EMBL AK059356             [TGCTTTAATTTATTTACCTTACATTTTGCTACTCACATAAACTTTGTTCCAGAAACATTGTTTGAAAATATGGTGATTTTTTTAACTATTGTTGATAAAAACTTGGTGCTGTTATGGACCTGGCCTGATCTGTGGTGGCGAATGAGTGAGGGGATGGCATCACTCTATATATGCGAAAAGCCGAAAACAGCCATGTGTTCTGCTCTTTGTTCCTTTTTGTTTAAGTTTTGTTGCTGGGATAACACTTTGTAGCCTGCCTCTCATGAATCATGATGGAAATGGAAGGGGTCTCCCTCTTCTGGCTATAATACATTTGCTTCTCAAATATTACAGTACATTTCTAAAGGAAAGAAAAAAAAAGATATGGTAAATTGAAACTTCCATGCCTTTTTCCATATCTATTTATAGGTTTTGCACGTGTTGTCCAAATGTGATCCTTTATAGAGGTCACACCTTTATCCAGGTTTCTTATCCGAGCTAATCGAAATCCAAGAACAAAAATACTACTGTGGCAAAAAAGAATAAGGAAGAACATAAGGAACTCCCACATGTCCAAAAATGGAAGCAATTAGTTTGGTTTCAATACAGGCCACAAAAGAAATGGTCAGCTCAACTCCTACGGTTGAGGCTCACACCTCATTCACCCTGTCCTGAGCAATCCTTTTTAGGCTCCTTCCTGCAAGGCTGCAACTATATAGGCCGATGAGGACAGAAGGGGGAAAAAACACAGGCGCATTCTACCGAGAGGCACAGGGGTTGCAAGAAGTCGCCTAATTCTCCTATTGAATTAGGCACATCTTCGCCCCCACATTGCCTCTCATTGTAAAATAGTATCAACTGATAATCCACAGGAACTAAACAACAATTAAATCCAATTATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCGAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACA TTTCCGAATGCCAAAACATATATTGTGCGAAATGGATCATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCATGTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGC AAAGGGTTCATCAGGTTAGTCAATGTCTGTAGGAAAGGAAAATGATGTTAAAATGTTGTTG CCGAAATGTATTGGGAGCATGATCAGTAAAGCTTGGGATGACATAATCAAATAGTACAAA                                                ]
[+] EMBL AK099299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGATGAGGACAGAAGGGGGAAAAAACACAGGCGCATTCTACCGAGAGGCACAGGGGTTGCAAGAAGTCGCCTAATTCTCCTATTGAATTAGGCACATCTTCGCCCCCACATTGCCTCTCATTGTAAAATAGTATCAACTGATAATCCACAGGAACTAAACAACAATTAAATCCAATTATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACA TTTCCGAATGCCAAAACATATATTGTGCGAAATGGATCATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCATGTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGC AAAGGGTTCATCAGGTTAGTCAATGTCTGTAGGAAAGGAAAATGATGTTAAAATGTTGTTG CCGAAATGTATTGGGAGCATGATCAGTAAAGCTTGGGATGACATAATCAAATAGTACAAACGATAGGACCATGTTTGCCTGTGCTTTTGCAACAAATCAATCACAAAT]
[+] EMBL CA766887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 acGAGACAAGGGGG  AAAACACAGGCGCATTCTACCGAGAGGCACAGGGGTTGCAAGAAGTCGCCTAATTCTCCTATTGAATTAGGCACATCTTCGCCCCCACATTGCCTCTCATTGTAAAATAGTATCAACTGATAATCCACAGGAACTAAACAACAATTAAATCCAATTATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACATTTTCCGAATGCCAAAACATATATTGNGCGAAATGGATCATGTCAACCATTGGGGCCGTAAATACTGNGC AAAAATGAATCATGTCAAGCACGTTTTGATGGGGAGGNTGNGACCAGCAAAAGGGTT ATCAGGTTAGTCAATGTCTGTAGGAAAGGAAAA GGTGGTTAAATGTTGTTGNCCG                                                                                                         ]
[+] EMBL CB097081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGGCCATTGGGAGATCTTGGCTACTGAGATATCATTGACA TTTCCGAATGCCAAAACATATATTGTGCGAAATGGATCATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCATGTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGC AAAGGGTTCATCAGGTTAGTCAATGTCTGTAGGAAAGGAAAATGATGTTAAAATGTTGTTG CCGAAATGTATTGGGGGCATGATCAGTAAAGCTTGGGATGACATAATCAA                                                          ]


>consensus_6486#0 TGCTTTAATTTATTTACCTTACATTTTGCTACTCACATAAACTTTGTTCCAGAAACATTG TTTGAAAATATGGTGATTTTTTTAACTATTGTTGATAAAAACTTGGTGCTGTTATGGACC TGGCCTGATCTGTGGTGGCGAATGAGTGAGGGGATGGCATCACTCTATATATGCGAAAAG CCGAAAACAGCCATGTGTTCTGCTCTTTGTTCCTTTTTGTTTAAGTTTTGTTGCTGGGAT AACACTTTGTAGCCTGCCTCTCATGAATCATGATGGAAATGGAAGGGGTCTCCCTCTTCT GGCTATAATACATTTGCTTCTCAAATATTACAGTACATTTCTAAAGGAAAGAAAAAAAAA GATATGGTAAATTGAAACTTCCATGCCTTTTTCCATATCTATTTATAGGTTTTGCACGTG TTGTCCAAATGTGATCCTTTATAGAGGTCACACCTTTATCCAGGTTTCTTATCCGAGCTA ATCGAAATCCAAGAACAAAAATACTACTGTGGCAAAAAAGAATAAGGAAGAACATAAGGA ACTCCCACATGTCCAAAAATGGAAGCAATTAGTTTGGTTTCAATACAGGCCACAAAAGAA ATGGTCAGCTCAACTCCTACGGTTGAGGCTCACACCTCATTCACCCTGTCCTGAGCAATC CTTTTTAGGCTCCTTCCTGCAAGGCTGCAACTATATAGGCCGATGAGGACAGAAGGGGGA AAAAACACAGGCGCATTCTACCGAGAGGCACAGGGGTTGCAAGAAGTCGCCTAATTCTCC TATTGAATTAGGCACATCTTCGCCCCCACATTGCCTCTCATTGTAAAATAGTATCAACTG ATAATCCACAGGAACTAAACAACAATTAAATCCAATTATGGACGGATTGGTAGGCCTCTT GAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCC ATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGT GAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAA GCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAAT AGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTC CATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATT CTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGG TGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAAGTGTCTCATGG CCATTGGGAGATCTTGGCTACTGAGATATCATTGACATTTCCGAATGCCAAAACATATAT TGTGCGAAATGGATCATGTCAACCATTGGGGCTGTAAATACTGTGCAAAAAATGAATCAT GTCAAGCACGTTTTGATGTGGAGGTTGTGACCAGCAAAGGGTTCATCAGGTTAGTCAATG TCTGTAGGAAAGGAAAATGATGTTAAAATGTTGTTGCCGAAATGTATTGGGAGCATGATC AGTAAAGCTTGGGATGACATAATCAAATAGTACAAACGATAGGACCATGTTTGCCTGTGC TTTTGCAACAAATCAATCACAAAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)