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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6490 cluster # 6490       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6490#0 length = 688 sequences # 4  

consensusID : consensus_6490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 688
fasta sequence
                              [AGCCAAAATCTTCTCTGAATCAATTTTTTTCACCAAAAATGAGAGGGAGGGGGGGACGACATGCTGATCTCTCAGCGATCTGTCCTAAACAACCCAGACCATCCTACTTTATACACTTTTAATCCGAGAAACATGGACGCCACGTATCTTGATCTTGTCGATCCAACGGACCAGATTGATTGATTTTATCCATACGATACGAGTAGTTAAGCACTTAGCACCACCACGGCGAGCTGGCTGGATACTGCTGGTAGACGACGTGCTGCGCCGGCGGCGCGTAGGCGTAGGGGTGGTAGCTCCACGAGTACTCGACGACGGCGGCGGTGGCGGGCTCCGGCTTCTTCTCCTCCTTCTTGACCTCGCCGACGGTCACGAGCGTGGCGTGGCCGACCTTCTTGCGCAGCGCGGCGGTGAGCTTGATGGAGTCGACGCCGTCGCCGACCACCACCACCTGGTCCTTGCCGTCCCCGGCCAGCGCCACCGAGTCCACCCCTCCCGTCGCCGCCACCAGCGCCATCGCCTTCGACCTGCACTTGTCGCACGACATCTCCACCTTGATCACGATCTTTTGCTTGGCCATTGCTTCGCTTAATTTCTTGGCAGGAACGAGATCGGAGGCTACTAATCAGCAAAACCCTGATCGAATTGTGTGA--TTGTACTCTTCACTAGCTTGGGAATTAGCTCAGCT]

[+] EMBL BI305672             [AGCCAAAATCTTCTCTGAATCAATTTAAATCACCAAAAATGAGAGGGA GGGGGGACGACATGCTGATCGCTCAGCGATCTGTCCTAAACAACCCAGATCATCCTACTTTATACACTTTTAATCCGAGAAACATGGACGCCACGTATCTTGATCTTGTCGATCCAACGGACCAGATTGATTGATTTTATCCATACGATACGAGTAGTTAAGCACTTAGCACCACCACGGCGAGCTGGCTGGATACTGCTGGTAGACGACGTGCTGCGCCGGCGGCGCGTAGGCGTAGGGGTGGTAGCTCCACGAGTACTCGACGACGGCGGCGGTGGCGGGCTCCGGCTTCTTCTCCTCCTTCTTGACCTCGCCGACGGTCACGAGCGTGGCGTGGCCGACCTTCTTGCGCAGCGCGGCGGTGAGCTTGATGGAGTCGACGCCGTCGCCGACCACCACCACCTGGTCCTTGCCGTCCCCGGCCAGCGCCACCGAGTCCACCCCTCCCGTCGCCGCCACCAGCGCCATCGCCTTCGACCTGCACTTGTCGCACGACATCTCCACCTTGATCACGATCTTTTGCTTGGCCATTGCTTCGCTTAATTTCTTGGCAGGAACGAGATCGGAGGCTACTAATCAGCAAAACCCTGATCGAATTGTGTGA  TTGTACTCT                          ]
[+] EMBL CF331111             [                        TTTTTTCACCAAAAATGAGAGGGAGGGGGGGACGACATGCTGATCTCTCAGCGATCTGTCCTAAACAACCCAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF331112             [                         TTTTTCACCAAAAATGAGAGGGAGGGGGGGACGACATGCTGATCTCTCAGCGATCTGTCCTAAACAACCCAGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BE230694             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCTCCCGTCGCCGCCACCAGCGCCATCGCCTTCGACCTGCACTTGTCGCACGACATCTCCACCTTTATCACGATCTTTTGCTTGGCCATTGCTTTGCTTAATTTCTTGGCAGGAACGAGATCGGAGGCTACTAATTAGCAAAACCCTGATCGAATTGTGTGATTTTGTACTCTTCACTAGCTTGGGAATTAGCTCAGCT]


>consensus_6490#0 AGCCAAAATCTTCTCTGAATCAATTTTTTTCACCAAAAATGAGAGGGAGGGGGGGACGAC ATGCTGATCTCTCAGCGATCTGTCCTAAACAACCCAGACCATCCTACTTTATACACTTTT AATCCGAGAAACATGGACGCCACGTATCTTGATCTTGTCGATCCAACGGACCAGATTGAT TGATTTTATCCATACGATACGAGTAGTTAAGCACTTAGCACCACCACGGCGAGCTGGCTG GATACTGCTGGTAGACGACGTGCTGCGCCGGCGGCGCGTAGGCGTAGGGGTGGTAGCTCC ACGAGTACTCGACGACGGCGGCGGTGGCGGGCTCCGGCTTCTTCTCCTCCTTCTTGACCT CGCCGACGGTCACGAGCGTGGCGTGGCCGACCTTCTTGCGCAGCGCGGCGGTGAGCTTGA TGGAGTCGACGCCGTCGCCGACCACCACCACCTGGTCCTTGCCGTCCCCGGCCAGCGCCA CCGAGTCCACCCCTCCCGTCGCCGCCACCAGCGCCATCGCCTTCGACCTGCACTTGTCGC ACGACATCTCCACCTTGATCACGATCTTTTGCTTGGCCATTGCTTCGCTTAATTTCTTGG CAGGAACGAGATCGGAGGCTACTAATCAGCAAAACCCTGATCGAATTGTGTGATTGTACT CTTCACTAGCTTGGGAATTAGCTCAGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)