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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1329 fasta sequence
[TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGG-ATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGT-GGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTAGAT--GGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCATATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTTGATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGAAGTGGACATATCCCAGGGACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCG-CCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTACCACAAAAAA]
[+] EMBL AK066425 [TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGG ATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGT GGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTAGAT GGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCATATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTTGATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGAAGTGGACATATCCCAGGGACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCG CCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTG ]
[+] EMBL CF315512 [ TCCTGCTGCTCCGCCCTTCT AAGATCACC AGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGGAATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGTNGGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTA ATNGGGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTG ]
[-] EMBL CF315513 [ ACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTACCACAAAAAA]
consensusID : consensus_6497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CTTGGGAGGGTAGATGGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGCGGAAGGAGTAAGAAGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGGAACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTAAAAAAAAAAAA]
[-] EMBL CA763251 [CTTGGGAGGGTAGATGGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGCGGAAGGAGTAAGAAGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGGAACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6497#0 TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCG 60
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 AGCCGGCAGCCGACGGGTCCAATGGCGCAGGATGATTCGGTTGTTTCTGCTCAGTGGCTG 120
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 CATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTA 180
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 GAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTC 240
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 GACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAG 300
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 GCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTAT 360
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 GATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGTGGATGTTCAGAGTTTATGGACAC 420
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 AATAAAATTTGGGTGTTAGATGGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTT 480
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 GAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAA 540
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 AGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCAT 600
consensus_6497#1 ------------------------------------------------------------
consensus_6497#0 ATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTT 660
consensus_6497#1 ---------------------------------------------CTTGGGAGGGTAGAT 15
* ** * *
consensus_6497#0 GATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGA 720
consensus_6497#1 GGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGC---GGAAGGAGTAAGA 72
* * **** ** * * * * * * * * * *************
consensus_6497#0 AG-TGGACATATCCCAGGGAC-AAAATGTGTTCC--ATTCCTTGAGATGTTTGATGATGC 776
consensus_6497#1 AGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGG 132
** *** ************** *********** ***** ***** * ** * ***
consensus_6497#0 A--CCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCC 834
consensus_6497#1 AACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCC 192
* ** ****** *** **** * **********************************
consensus_6497#0 CTTGATCGCCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTG 894
consensus_6497#1 CTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTG 252
************* **********************************************
consensus_6497#0 GGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGG 954
consensus_6497#1 GGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGG 312
************************************************************
consensus_6497#0 GAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAG 1014
consensus_6497#1 GAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAG 372
************************************************************
consensus_6497#0 CTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGG 1074
consensus_6497#1 CTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGG 432
******************** ** ************************************
consensus_6497#0 ACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCT 1134
consensus_6497#1 ACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCT 492
************************************************************
consensus_6497#0 TGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTT 1194
consensus_6497#1 TGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTT 552
************************************************************
consensus_6497#0 ATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGT 1254
consensus_6497#1 ATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGT 612
************************************************************
consensus_6497#0 CACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTT 1314
consensus_6497#1 CACTACATTATTTTTTT--TATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTT 670
***************** *****************************************
consensus_6497#0 GTTTACCACAAAAAA- 1329
consensus_6497#1 GTTTAAAAAAAAAAAA 686
***** * ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||