cluster # 650

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 650 cluster # 650 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_650#0 length = 462 sequences # 1

consensus_650#1 length = 315 sequences # 1

consensusID : consensus_650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTGAATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTACATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACTGTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGAAACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA]

[+] EMBL BI811806             [TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTGAATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTACATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACTGTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGAAACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA]




>consensus_650#0
TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTG
AATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGA
CCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTA
GCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTAC
ATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAG
CATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACT
GTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGA
AACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA

consensusID : consensus_650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCAAATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTACATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC]

[-] EMBL AU225400             [CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCAAATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTACATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC]




>consensus_650#1
CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTGAATCAAAATGGAAGAACATCTC
CCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGA
TATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCAAATGGCA
CTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTACATGCATTTAAAACTATGCAAAAA
GTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATAT
TTATGTTTGAGCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_650#0      TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTG 60
consensus_650#1      ----------------------CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTG 38
                                            **    *      *   **  *    ***********

consensus_650#0      AATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGA 120
consensus_650#1      AATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGA 98
                     **** ********************************* *********************

consensus_650#0      CCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTA 180
consensus_650#1      CCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTA 158
                     ************************************************************

consensus_650#0      GCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTAC 240
consensus_650#1      GCCATCTGAAAATCA-AATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTAC 217
                     *************** **************************** ***************

consensus_650#0      ATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAG 300
consensus_650#1      ATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAG 277
                     ****************** *****************************************

consensus_650#0      CATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACT 360
consensus_650#1      CATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC---------------------- 315
                     *********************************    *                      

consensus_650#0      GTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGA 420
consensus_650#1      ------------------------------------------------------------
                                                                                 

consensus_650#0      AACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA 462
consensus_650#1      ------------------------------------------