These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2411 fasta sequence [ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCGGCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGGCTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCGGGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTGGAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATATGATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATTTTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATGTTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAAGGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTGCACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACCCTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTGTAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTTTGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGGAAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAGCACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCACATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGAACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTGAAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTGCAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACCACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTTTTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGATGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAGCCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCATTTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATGAAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAATGTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTATTTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCATATATGTGCTAAGAACCTAACACTTCTTTCGGCTTACTCTTATTCAAGTTATCCTTTCTGATATGTTATCTTCCATGTTTCTCAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGATCATATTGTCTGGTTTCTATAA] [+] EMBL AK070658 [ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCGGCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGGCTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCGGGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTGGAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATATGATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATTTTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATGTTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAAGGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTGCACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACCCTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTGTAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTTTGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGGAAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAGCACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCACATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGAACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTGAAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTGCAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACCACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTTTTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGATGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAGCCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCATTTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATGAAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAATGTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTATTTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCATATATGTGCTAAGAACCTAACACTTCTTTCGGCTTACTCTTATTCAAGTTATCCTTTCTGATATGTTATCTTCCATGTTTCTCAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGATCATATTGTCTGGTTTCTATAA] [+] EMBL C98957 [ CCAAGNG AGGGATCCG TGTTGAATGAAA TTTACTNCTNCATAACCAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGA TTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTAaaaaaaa ] consensusID : consensus_6505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence [TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAG] [+] EMBL AU064206 [TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAG] [+] EMBL AU163643 [TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAA CTCTGGTTTCGGATGAAGGATGA GTCGTACAAG ACTCCAAGAG AGGGA TCCATGTTG ATG AATTTT CTTCTACATt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6505#0 ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCG 60 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGG 120 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCG 180 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTG 240 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCG 300 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAG 360 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATAT 420 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATT 480 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATG 540 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAA 600 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTG 660 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACC 720 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTG 780 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTT 840 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGG 900 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 AAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAG 960 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCA 1020 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGA 1080 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 ACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTG 1140 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 AAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTG 1200 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACC 1260 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 ACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTT 1320 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGA 1380 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAG 1440 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCAT 1500 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATG 1560 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 AAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAAT 1620 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTAT 1680 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCAT 1740 consensus_6505#1 -------------------------------------TACTTCTGGAAGCAGATGGGCAA 23 * ** *** **** ** consensus_6505#0 ATATGTGCTAAGAACCTA-ACACTTCTT----TCGGCTTACTCTTATTCAAGTTATCCTT 1795 consensus_6505#1 GGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCC 83 **** * ***** * ** * ** * *** * ** ** consensus_6505#0 TCT-GATATGTTATCTTCCATGTTTCTC----AGGAAGAAAGAGAAATGGCCCACCTTTA 1850 consensus_6505#1 CCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTA 143 ** * ** * ** * * * **************************** consensus_6505#0 CGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAG 1910 consensus_6505#1 CGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAG 203 ************************************************************ consensus_6505#0 TGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTC 1970 consensus_6505#1 TGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTC 263 ************************************************************ consensus_6505#0 TGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTG 2030 consensus_6505#1 TGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTG 323 ************************************************************ consensus_6505#0 GTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATG 2090 consensus_6505#1 GTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATG 383 ************************************************************ consensus_6505#0 AAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCA 2150 consensus_6505#1 AAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCA 443 ************************************************************ consensus_6505#0 GCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTA 2210 consensus_6505#1 G----------------------------------------------------------- 444 * consensus_6505#0 CTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGA 2270 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 GTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATT 2330 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 TTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGAT 2390 consensus_6505#1 ------------------------------------------------------------ consensus_6505#0 CATATTGTCTGGTTTCTATAA 2411 consensus_6505#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||