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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2126 fasta sequence
[CGCGTCCGGCTCGGCCACCCTCCTCTACCCCAAAACCCCGCAATCCCCTCGCCTCCTCCGCCGCAACCCCCACTACTCCGGCCTCCGCCTCGTCCACCCCCTCCTCCTCGCCACCGTCTCCCCGCCGCCTCCCGCCGCCCTCCGACGCAGGCGCAACTCCACCACCATCCATGCATCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCTTCCTTCCCCGCCTCCTCGACCCCGCCTCCGCGCCCGCCGCGGACGGACCCGCCCGAGGAACACCCCACCGTGGCCCGCGCAGGCCGCAGCAAGAAGCACAGGAAGCCCTCGGGGGGACGCATCGAGGGCGGCGGCGACGTGCGGCGCGAGGCCAAGTCCCGCGCCCGCATCCGCAGCCGCCGCCTCGGCGAGAACGCCTTCTACCGGAGGAAGCGGCGCGCCGCCAAGGAGAACCAGGCCGACGCCTTCACCGACGCCGAGCTGGAGATGATCGGCCTCGGCTACGACCGCTCCGTCCGCTTCATGGACGGGCCCGACGACCCGCGCCTCCGCCACCGGCACGACTGGTACAGGTTCGGCCGCTACGGGCCCTACTCCTGGCGCGGCATCGTCGTCGGCCCGCCCATCCGCGGCCGCTTCTCCGACGACCGCGTCTCCCTCATGTCCGAGGTCTCCGACCACGACGAGTGGGACCGCGTCGAGCA-GTTCGACA-TGTCCAAC-CAGTTCTCCAACCGC-CTCAACGAGC-TCGACGCCG-CCGTCGGCT-TCCGGTACTAC-TGGGTC-TTCGTGAGACACC-CTAGGTGGCGCCC-CGACGAGCTC-CCCTGGGAGCAGTGGACGCTCTCCGCGGAGGTGGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCATGGGGAGGCTTGGCAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCATGGACGCGCCCAGACATCATATATGTCAAGCGGCCGCTCTACCAGTCGCGGTTCGAGCCGCAGAAGAATTTCTATAGCCAGCTCCGCCCTTTGGTCGATCCCGTGACAGAGAACCAGTTCTTGTTTGATCTCGAGCATGATGGCCAGGTCATTCGCACTACCTACTTCGGTGGCCTATGCAGGATTGTGAAGGCGAGTCCAAAAGCTTATGTGGATGATGTTGTGAATGCGTACTCGAAACTGAGCGACGTGGACAAAAACAGGTGCCTGGAGTTCCTGCTCACAAATCATCCCATGGAACTGCTCCATCCCTACACCAAGGAATGGAAGGTGAAGCTAGAGGAGATGGAGCTTGGATGCGATGCGCCTGATGATAACGAGAGTGACGATGAGGGTGGTGATGAGAGTGGAACTGAGGTTGTTGATTGGGTTGAGGATGATGGGTTTGATGAGGGTGGTGATACCGATGATGATGAAGAACCTGGTTATGATGACGACGAAGTAATCGATGTCAGGGAAGAGGTGGAAACAGAAGAAGTAGAAAGTGATGATGAGAGTGAGAAGTACTGGGATGAGCAATGGAAGCAGGCCATGAAAAGTTCTGATAAAATGGAGAAGTTGGTCAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCAACAGGAGAAAGAGATGGAATTGAGAATGGCCCGTGCAAACACAATGGTTATGAAGCAGGAGCAGACTGAGGATGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGGATGAGCAGCAGGAGAGTCCAAGGGGCAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCTGAGGGCCGCTGTCCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTCTTATGAGGCATTTCATTGTTGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTAGATAACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGATCTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTGTGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAATTCTGTTATACTGTTTTATAGTCAAGTTGGAGTTT]
[+] EMBL AK100471 [CGCGTCCGGCTCGGCCACCCTCCTCTACCCCAAAACCCCGCAATCCCCTCGCCTCCTCCGCCGCAACCCCCACTACTCCGGCCTCCGCCTCGTCCACCCCCTCCTCCTCGCCACCGTCTCCCCGCCGCCTCCCGCCGCCCTCCGACGCAGGCGCAACTCCACCACCATCCATGCATCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCTTCCTTCCCCGCCTCCTCGACCCCGCCTCCGCGCCCGCCGCGGACGGACCCGCCCGAGGAACACCCCACCGTGGCCCGCGCAGGCCGCAGCAAGAAGCACAGGAAGCCCTCGGGGGGACGCATCGAGGGCGGCGGCGACGTGCGGCGCGAGGCCAAGTCCCGCGCCCGCATCCGCAGCCGCCGCCTCGGCGAGAACGCCTTCTACCGGAGGAAGCGGCGCGCCGCCAAGGAGAACCAGGCCGACGCCTTCACCGACGCCGAGCTGGAGATGATCGGCCTCGGCTACGACCGCTCCGTCCGCTTCATGGACGGGCCCGACGACCCGCGCCTCCGCCACCGGCACGACTGGTACAGGTTCGGCCGCTACGGGCCCTACTCCTGGCGCGGCATCGTCGTCGGCCCGCCCATCCGCGGCCGCTTCTCCGACGACCGCGTCTCCCTCATGTCCGAGGTCTCCGACCACGACGAGTGGGACCGCGTCGAGCA GTTCGACA TGTCCAAC CAGTTCTCCAACCGC CTCAACGAGC TCGACGCCG CCGTCGGCT TCCGGTACTAC TGGGTC TTCGTGAGACACC CTAGGTGGCGCCC CGACGAGCTC CCCTGGGAGCAGTGGACGCTCTCCGCGGAGGTGGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCATGGGGAGGCTTGGCAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCATGGACGCGCCCAGACATCATATATGTCAAGCGGCCGCTCTACCAGTCGCGGTTCGAGCCGCAGAAGAATTTCTATAGCCAGCTCCGCCCTTTGGTCGATCCCGTGACAGAGAACCAGTTCTTGTTTGATCTCGAGCATGATGGCCAGGTCATTCGCACTACCTACTTCGGTGGCCTATGCAGGATTGTGAAGGCGAGTCCAAAAGCTTATGTGGATGATGTTGTGAATGCGTACTCGAAACTGAGCGACGTGGACAAAAACAGGTGCCTGGAGTTCCTGCTCACAAATCATCCCATGGAACTGCTCCATCCCTACACCAAGGAATGGAAGGTGAAGCTAGAGGAGATGGAGCTTGGATGCGATGCGCCTGATGATAACGAGAGTGACGATGAGGGTGGTGATGAGAGTGGAACTGAGGTTGTTGATTGGGTTGAGGATGATGGGTTTGATGAGGGTGGTGATACCGATGATGATGAAGAACCTGGTTATGATGACGACGAAGTAATCGATGTCAGGGAAGAGGTGGAAACAGAAGAAGTAGAAAGTGATGATGAGAGTGAGAAGTACTGGGATGAGCAATGGAAGCAGGCCATGAAAAGTTCTGATAAAATGGAGAAGTTGGTCAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCAACAGGAGAAAGAGATGGAATTGAGAATGGCCCGTGCAAACACAATGGTTATGAAGCAGGAGCAGACTGAGGATGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGGATGAGCAGCAGGAGAGTCCAAGGGGCAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCTGAGGGCCGCTGTCCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTCTTATGAGGCATTTCATTGTTGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTAGATAACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGATCTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTGTGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAATTCTGTTATACTGTTTTATAGTCAAGTTGGAGTTT]
[-] EMBL CB964624 [ GCGTCGAGCACGTTCGACACTGTCCAACGCAGTTCTCCAACCGCACTCAACGAGCGTCGACGCCGTCCGTCGGCTGTCCGGTACTACGTGGGTCGTTCGTGAGACACCACTAGGTGGCGCCCACGACGAGCTCACCCTGGGAGCAGTGGACGCTCTCCGCGGAGGTGGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCATGGGGAGGCTTGGCAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCAT GACGCGCCCAGACATCA ]
consensusID : consensus_6515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 297 fasta sequence
[ATGAGGCATTTCATTGGTGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTATATAACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGATCTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTGTGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAAAAAAAAAAAATGAAAAAAAAAATCACTGTCATGCCGTTACGTACCGTAT]
[+] EMBL CF332244 [ATGAGGCATTTCATTGGTGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTATATAACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGATCTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTGTGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAAAAAAAAAAAATGAAAAAAAAAATCACTGTCATGCCGTTACGTACCGTAT]
[-] EMBL CF332243 [ TGAGGCATTTCATTGTTGATGGAGAGATAGATTAGCTTTAAAATGTTAAGATGATATATTTTCAGAGCCCCTAGATAATTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAAATGTGTTCAATTAGTGGATTTTACCAATTTTGATTTGTGCCCTTAGGGAAAAGTCAGTCATGATGTAATCCTTCCTTTGTGGAATTTTCAGTAAATTTTTGAGAATAGAAGCTATTACGGGATTTTTGAAAAAAAAAAAAa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6515#0 CGCGTCCGGCTCGGCCACCCTCCTCTACCCCAAAACCCCGCAATCCCCTCGCCTCCTCCG 60
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCGCAACCCCCACTACTCCGGCCTCCGCCTCGTCCACCCCCTCCTCCTCGCCACCGTCTC 120
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCCGCCGCCTCCCGCCGCCCTCCGACGCAGGCGCAACTCCACCACCATCCATGCATCCTC 180
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CTCCTCCGCCGCCGCCGCCGCCGCCGCCGCTTCCTTCCCCGCCTCCTCGACCCCGCCTCC 240
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GCGCCCGCCGCGGACGGACCCGCCCGAGGAACACCCCACCGTGGCCCGCGCAGGCCGCAG 300
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CAAGAAGCACAGGAAGCCCTCGGGGGGACGCATCGAGGGCGGCGGCGACGTGCGGCGCGA 360
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GGCCAAGTCCCGCGCCCGCATCCGCAGCCGCCGCCTCGGCGAGAACGCCTTCTACCGGAG 420
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GAAGCGGCGCGCCGCCAAGGAGAACCAGGCCGACGCCTTCACCGACGCCGAGCTGGAGAT 480
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GATCGGCCTCGGCTACGACCGCTCCGTCCGCTTCATGGACGGGCCCGACGACCCGCGCCT 540
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCGCCACCGGCACGACTGGTACAGGTTCGGCCGCTACGGGCCCTACTCCTGGCGCGGCAT 600
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CGTCGTCGGCCCGCCCATCCGCGGCCGCTTCTCCGACGACCGCGTCTCCCTCATGTCCGA 660
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GGTCTCCGACCACGACGAGTGGGACCGCGTCGAGCAGTTCGACATGTCCAACCAGTTCTC 720
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CAACCGCCTCAACGAGCTCGACGCCGCCGTCGGCTTCCGGTACTACTGGGTCTTCGTGAG 780
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 ACACCCTAGGTGGCGCCCCGACGAGCTCCCCTGGGAGCAGTGGACGCTCTCCGCGGAGGT 840
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCATGGGGAGGCTTGG 900
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCATGGACGCGCCCAGACATCATATA 960
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 TGTCAAGCGGCCGCTCTACCAGTCGCGGTTCGAGCCGCAGAAGAATTTCTATAGCCAGCT 1020
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCGCCCTTTGGTCGATCCCGTGACAGAGAACCAGTTCTTGTTTGATCTCGAGCATGATGG 1080
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCAGGTCATTCGCACTACCTACTTCGGTGGCCTATGCAGGATTGTGAAGGCGAGTCCAAA 1140
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 AGCTTATGTGGATGATGTTGTGAATGCGTACTCGAAACTGAGCGACGTGGACAAAAACAG 1200
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GTGCCTGGAGTTCCTGCTCACAAATCATCCCATGGAACTGCTCCATCCCTACACCAAGGA 1260
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 ATGGAAGGTGAAGCTAGAGGAGATGGAGCTTGGATGCGATGCGCCTGATGATAACGAGAG 1320
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 TGACGATGAGGGTGGTGATGAGAGTGGAACTGAGGTTGTTGATTGGGTTGAGGATGATGG 1380
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GTTTGATGAGGGTGGTGATACCGATGATGATGAAGAACCTGGTTATGATGACGACGAAGT 1440
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 AATCGATGTCAGGGAAGAGGTGGAAACAGAAGAAGTAGAAAGTGATGATGAGAGTGAGAA 1500
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GTACTGGGATGAGCAATGGAAGCAGGCCATGAAAAGTTCTGATAAAATGGAGAAGTTGGT 1560
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCAACAGGAGAAAGA 1620
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 GATGGAATTGAGAATGGCCCGTGCAAACACAATGGTTATGAAGCAGGAGCAGACTGAGGA 1680
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 TGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGGATGAGCAGCAGGAGAGTCCAAGGGG 1740
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCTGAGGGCCGCTGT 1800
consensus_6515#1 ------------------------------------------------------------
consensus_6515#0 CCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTCTTATGAGGCATTTCATTGT 1860
consensus_6515#1 -------------------------------------------ATGAGGCATTTCATTGG 17
****************
consensus_6515#0 TGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTAGAT 1920
consensus_6515#1 TGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCAGAGCCACTATAT 77
********************************************************* **
consensus_6515#0 AACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGAT 1980
consensus_6515#1 AACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTTCAATTAGTGGAT 137
************************************************************
consensus_6515#0 CTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTG 2040
consensus_6515#1 CTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTAATCCTTCCTTTG 197
************************************************************
consensus_6515#0 TGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAATTC------ 2094
consensus_6515#1 TGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCTGAAAAAAAAAAA 257
***************************************************
consensus_6515#0 -TGTTATACTGTTTTATAGTCAAGTTGGAGTTT------- 2126
consensus_6515#1 ATGAAAAAAAAAATCACTGTCATGCCGTTACGTACCGTAT 297
** * * * * **** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||