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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 652 cluster # 652       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_652#0 length = 593 sequences # 1  
consensus_652#1 length = 453 sequences # 1  

consensusID : consensus_652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT]

[+] EMBL CA759170             [TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT]


>consensus_652#0 TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAA ATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTG CGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAG TAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGA ACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAG GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGG TGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCT CCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGT CATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACG ACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT



consensusID : consensus_652#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG]

[-] EMBL AB021942             [GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG]


>consensus_652#1 GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCG CGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCG AAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATG CGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCG CTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACG ACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGT TTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTAC AGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_652#0      TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAA 60
consensus_652#1      ------------------------------------------------------------
                                                                                 

consensus_652#0      ATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTG 120
consensus_652#1      ------------------------------------------------------------
                                                                                 

consensus_652#0      CGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAG 180
consensus_652#1      ------------------------------------------------------------
                                                                                 

consensus_652#0      TAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGA 240
consensus_652#1      ------------------------------------------------------------
                                                                                 

consensus_652#0      ACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAG 300
consensus_652#1      ------------------------------------------------------GTGCAA 6
                                                                            **** 

consensus_652#0      GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGG 360
consensus_652#1      GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGG 66
                     ************************************ ********* ****** ******

consensus_652#0      TGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGG--------------- 405
consensus_652#1      TGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGC 126
                     **** *******************  ****** *  **   ****               

consensus_652#0      -----TCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGC 460
consensus_652#1      AAGAGTCGTGAAGAACTTCGTTC-GTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGG 185
                          *** **********   * ********** ***** ****************** 

consensus_652#0      GCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 520
consensus_652#1      GCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 245
                     **** *******************************************************

consensus_652#0      TAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAAT 580
consensus_652#1      TAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATT-CACGACGT 304
                     *************** **** **************** ** * * **  *   ****  *

consensus_652#0      C-AATTCTCCGAGT---------------------------------------------- 593
consensus_652#1      TTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTAT 364
                       *****    * *                                              

consensus_652#0      ------------------------------------------------------------
consensus_652#1      TGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCA 424
                                                                                 

consensus_652#0      -----------------------------
consensus_652#1      GCAGCTGCTGTCTGCCTCGCCTCGCCTCG 453
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)