These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT] [+] EMBL CA759170 [TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT] consensusID : consensus_652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG] [-] EMBL AB021942 [GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_652#0 TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAA 60 consensus_652#1 ------------------------------------------------------------ consensus_652#0 ATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTG 120 consensus_652#1 ------------------------------------------------------------ consensus_652#0 CGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAG 180 consensus_652#1 ------------------------------------------------------------ consensus_652#0 TAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGA 240 consensus_652#1 ------------------------------------------------------------ consensus_652#0 ACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAG 300 consensus_652#1 ------------------------------------------------------GTGCAA 6 **** consensus_652#0 GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGG 360 consensus_652#1 GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGG 66 ************************************ ********* ****** ****** consensus_652#0 TGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGG--------------- 405 consensus_652#1 TGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGC 126 **** ******************* ****** * ** **** consensus_652#0 -----TCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGC 460 consensus_652#1 AAGAGTCGTGAAGAACTTCGTTC-GTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGG 185 *** ********** * ********** ***** ****************** consensus_652#0 GCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 520 consensus_652#1 GCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 245 **** ******************************************************* consensus_652#0 TAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAAT 580 consensus_652#1 TAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATT-CACGACGT 304 *************** **** **************** ** * * ** * **** * consensus_652#0 C-AATTCTCCGAGT---------------------------------------------- 593 consensus_652#1 TTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTAT 364 ***** * * consensus_652#0 ------------------------------------------------------------ consensus_652#1 TGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCA 424 consensus_652#0 ----------------------------- consensus_652#1 GCAGCTGCTGTCTGCCTCGCCTCGCCTCG 453 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||