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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 939 fasta sequence
[CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA-CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC]
[+] EMBL AK111072 [CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC]
[-] EMBL CF334122 [ CGGTTTGCTGT AAGAAATACGATATAAAGATGAGATAACTCAGCTATT ATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAACCCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGCATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTAaaaaa ]
consensusID : consensus_6522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT]
[-] EMBL CB654561 [TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT]
consensusID : consensus_6522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC]
[+] EMBL CF334123 [GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6522#0 CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 60
consensus_6522#2 --------------------GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 40
consensus_6522#1 -----TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCAT 55
** * * * * *** * * * **
consensus_6522#0 GG-CCGGGACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 118
consensus_6522#2 GG-CCGGAACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 98
consensus_6522#1 GAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACAT-GGATTGGAAGAACTGTGC 114
* ** ** * ** * * * ** ** *** **** * * * *
consensus_6522#0 GCCCCA-GAGCGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 176
consensus_6522#2 GCCCCA-GAACGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 156
consensus_6522#1 TCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACG 174
* *** * **** ** ** * * * ** * * * * * *
consensus_6522#0 TCAA-------GTCGTCTCTCAAAA--------------------ATCCGACGG--TGCG 207
consensus_6522#2 TCAA-------GTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGG-TGCG 208
consensus_6522#1 TGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCG 234
* ** ** * ** * ** * ***
consensus_6522#0 GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 267
consensus_6522#2 GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 268
consensus_6522#1 GGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGT 294
* * *** * * * ** * **** * * * * * * * *
consensus_6522#0 GAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGT 327
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 TGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAG 354
consensus_6522#0 TTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAAT 387
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 TATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGT 414
consensus_6522#0 ACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGC 447
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 TCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGA 474
consensus_6522#0 TTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTT 507
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 AGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCC 534
consensus_6522#0 GCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGAT 567
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 CTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACA 594
consensus_6522#0 GTCTCTCAGGAACAACCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGT 627
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 AGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTT 654
consensus_6522#0 ATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCA 687
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 CATGAACATTTTAATGAATTAGCTCATCTGAGATTTT----------------------- 691
consensus_6522#0 ACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCC 747
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 TTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGG 807
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 CTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTA 867
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 TTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCC 927
consensus_6522#2 ------------------------------------------------------------
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 ATGGGTTACTTC 939
consensus_6522#2 ------------
consensus_6522#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||