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Oryza sativa
cluster # 6522 cluster # 6522       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6522#0 length = 939 sequences # 2  
consensus_6522#1 length = 691 sequences # 1  
consensus_6522#2 length = 268 sequences # 1  

consensusID : consensus_6522#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 939
fasta sequence
                              [CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA-CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC]

[+] EMBL AK111072             [CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC]
[-] EMBL CF334122             [                                                                                                                                                                                                                                                                                                                                   CGGTTTGCTGT AAGAAATACGATATAAAGATGAGATAACTCAGCTATT ATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAACCCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGCATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTAaaaaa                                                    ]


>consensus_6522#0 CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT GGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGC CCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAA GTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTG CCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTC CTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGAT AACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACAT GGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGG TGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCA AGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAACCCACACTGTTCAGGGAC AGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATT TGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCA CCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATT TTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGT AGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTAT AATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC



consensusID : consensus_6522#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT]

[-] EMBL CB654561             [TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT]


>consensus_6522#1 TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATT AATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCA TGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATT GTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTT CATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTC TGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATT ATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTT TCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGAT TTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCT TTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAA GCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAA CATTTTAATGAATTAGCTCATCTGAGATTTT



consensusID : consensus_6522#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence
                              [GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC]

[+] EMBL CF334123             [GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC]


>consensus_6522#2 GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAA CCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCA GCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGA GCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCT GCCCGATGCCGCCGGGGATGATCACGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6522#0      CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 60
consensus_6522#2      --------------------GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 40
consensus_6522#1      -----TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCAT 55
                                             ** * * *           *   *** * * *   **

consensus_6522#0      GG-CCGGGACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 118
consensus_6522#2      GG-CCGGAACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 98
consensus_6522#1      GAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACAT-GGATTGGAAGAACTGTGC 114
                      *       **  **  * **   * * *      **  **  *** **** * *   * *

consensus_6522#0      GCCCCA-GAGCGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 176
consensus_6522#2      GCCCCA-GAACGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 156
consensus_6522#1      TCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACG 174
                       * *** *   **** ** ** *   * *  **      * * *     * *      * 

consensus_6522#0      TCAA-------GTCGTCTCTCAAAA--------------------ATCCGACGG--TGCG 207
consensus_6522#2      TCAA-------GTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGG-TGCG 208
consensus_6522#1      TGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCG 234
                      * **       ** *  **    *                     **  *       ***

consensus_6522#0      GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 267
consensus_6522#2      GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 268
consensus_6522#1      GGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGT 294
                      *    * ***      * * * **  *   **** *   * *  * *  *      * * 

consensus_6522#0      GAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGT 327
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      TGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAG 354
                                                                                  

consensus_6522#0      TTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAAT 387
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      TATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGT 414
                                                                                  

consensus_6522#0      ACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGC 447
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      TCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGA 474
                                                                                  

consensus_6522#0      TTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTT 507
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      AGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCC 534
                                                                                  

consensus_6522#0      GCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGAT 567
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      CTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACA 594
                                                                                  

consensus_6522#0      GTCTCTCAGGAACAACCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGT 627
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      AGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTT 654
                                                                                  

consensus_6522#0      ATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCA 687
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      CATGAACATTTTAATGAATTAGCTCATCTGAGATTTT----------------------- 691
                                                                                  

consensus_6522#0      ACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCC 747
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      ------------------------------------------------------------
                                                                                  

consensus_6522#0      TTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGG 807
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      ------------------------------------------------------------
                                                                                  

consensus_6522#0      CTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTA 867
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      ------------------------------------------------------------
                                                                                  

consensus_6522#0      TTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCC 927
consensus_6522#2      ------------------------------------------------------------
consensus_6522#1      ------------------------------------------------------------
                                                                                  

consensus_6522#0      ATGGGTTACTTC 939
consensus_6522#2      ------------
consensus_6522#1      ------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)