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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2182 fasta sequence
[CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTCGCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTTGCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTTATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTCAATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTTCAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCATCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATGCTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAATGTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGAGTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATGGCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATCAGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTTTCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTACATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAATGCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTAACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCAAAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTGAACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAGACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCAAAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAGAGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCGTTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCATAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATCTTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTATAATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCACTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGACTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAGATAACTATTTACATGTTGT]
[+] EMBL AK073450 [CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTCGCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTTGCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTTATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTCAATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTTCAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCATCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATGCTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAATGTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGAGTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATGGCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATCAGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTTTCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTACATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAATGCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTAACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCAAAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTGAACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAGACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCAAAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAGAGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCGTTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCATAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATCTTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTATAATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCACTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGACTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAG ]
[+] EMBL AA753361 [ atcggcCGAGTATATCGTA TTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAGGGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCA TTTCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTGTTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTTCTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAAGAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTTGTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGTACTGCTANGATGCTTGAAAAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACGATGTGTATTACAGATAACTATTTACATGTTGT]
consensusID : consensus_6529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence
[CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGC-TTACTGTGTGATGCTTCCG-CCCACTATAAATTTTGAGAGATTATATTTANTTTTGACAAAAAA]
[+] EMBL CF335443 [CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGC TTACTGTGTGATGCTTCCG CCCACTATAA ]
[-] EMBL CF335444 [ CGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCACAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCTCGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTAAATTTCTTGGCCGATTTGTTCTCTCTTCCACTTGTTGGATGCATCAGATCGAGAGGATTCAGTTCATTTGTCGAGGATATGGCATGGCACGGCAGCNTTACTGTGTGATGCTTCCGCCCCACTATAAATTTTGAGAGATTATATTTANTTTTGACAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6529#0 ----------CCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCA 50
consensus_6529#1 CCGTCCCGCTCCTCTCCGTCCTTTTCTGGACGGACTCGCCTCGGCGGCCGCAGCCAGCCA 60
**************************************************
consensus_6529#0 CAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCT 110
consensus_6529#1 CAGCCGCCGCTTACTTGAGATTGAGATTGTTGCCATCCCGTTGCCGATGGCGGCGATGCT 120
************************************************************
consensus_6529#0 CGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGTTGGAAATGCGGAGTC 170
consensus_6529#1 CGCGCCGGCCGCGCTCCCGCCCCGAGGTTTACAGAGTAAGGCGGT--AAATTTCTTGGCC 178
********************************************* ** * * * *
consensus_6529#0 GCAGTTGTTGCTACATGGAAAAGGTTGCATAGTGGCCGACGCAATGCTGTCAGAATATTT 230
consensus_6529#1 G-ATTTGTT-CTCTCTTCCACTTGTTGGAT-GCATCAGATCGAGAGGATTCAGTTCATTT 235
* * ***** ** * * **** ** * * ** * * **** ****
consensus_6529#0 GCAGCAAAGAGTAATGAAAGGAGGAGGAAATCACAAAGTATATCTCAAGGTCCAACATTT 290
consensus_6529#1 GTCG---AGGATATGGCATGGCACGGCAGCTTACTGTGTGATGCT-----TCCGCCCACT 287
* * ** ** * * ** * * * ** ** ** *** * *
consensus_6529#0 ATAAGTGAAGAAGCTTCTTCTTCAGGCAGTGGCGAAAACCCCACCACCAGCCTTGAGGTC 350
consensus_6529#1 ATAAATTTTGAGAGATTATATTTANTTT-TGACAAAAAA--------------------- 325
**** * ** * * ** * ** * ****
consensus_6529#0 AATGCCAATGATGTTACTACTGACGAGAAATTCACAGTTGCCCCAAGGAATGCGGTTCTT 410
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CAGGCTTGTACTCTCACATCTAGCTTACTCCTTGCAGGAGGTCTCGTTCTTCGTGAGGCA 470
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TCACATTTTGCATCTTTGAATGGATGGCCGGTTGCTGACCCTATGAATTTGTCATGTATG 530
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTTTCTTCTTATCTTTACAAATAAATGATGTGCCATGTAATAATGTTGAGTTACCTAAAT 590
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GTATGTAAGTCGATTTCTGTATTGTTTTTCTGCAGTCAATTTTGAGACCTGGCATCTTGA 650
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GTTGATTGCAGGACTTGTAATAATAATATCATCTAGCAGATATATTCTTCTACAGACATG 710
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GCCAGATTTCAGATATTCCAGTGAGACTGCAAATAGACAAGTATATACAACTTTACAATC 770
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AGTATTTCCTTTTTGTTTTATTTTCCTTCTCATGAAGGTCTGTCATTGGCAAATACAGTT 830
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TCTCAAGTAGCTGATGAATCTATGCTGTTGTCTGAATGAACATAATAACTTTTAGAGTAC 890
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ATTGTAACAATTGCATTACCTCACCAGTAAATGATGTACATTTTCACCTAGTCAATAAAT 950
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GCTCTGCTCTTTTTATGAACTGAGTGGAACCAAGGTTCCAAAAACTGGAGTAGATCAGTA 1010
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ACTGGTCCAGAGCCAGGGACTTGTTAGAGGTTGTCTATTGGCTAGAAGCCTATAGATTCA 1070
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AAACTTATATTTAAATAATTCCAACTGGTTGCTGGTCAAAATTTTGAACTTTTGGATTTG 1130
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AACCCTTTTCCTGTAACTGGCCAGTTACTGGATTTAACCAGTGGCTGGTAATCTAGACAG 1190
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ACCAGTATTTAGAATGCTGAGTGCAACGAAAGATTTTACCAAGTCTGGCACATAATCGCA 1250
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AAGTTCCCGGGTCGATGGGATCGAGGAATGGGTCGAGGAATGTGGTATGCTACTTGCGAG 1310
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AGGTTTTTACAAGGTGGGGACAAAAATGACCCCGCGTTCCCGGGACAGGGATGGCTGGCG 1370
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TTCCCGGGTTGAGGAACGTTGCCACCAACCCCGTTTCCAAATATACAAAGTTGAGTTGCA 1430
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TAGTTGCATTAGTTTCCCCTAATGCAAGTGTTTCCGTTATATTGTAATATGTCATAGATC 1490
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TTTATTTCAAGATGCAAAAAAGTACATTGTATCCAGTACTATCAGGTGTCTTTTCTTTAT 1550
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 AATCATTTGAGACTTCGGCCCTGGAACACTTCAAATTCTTAGATAGTGCAAGTTCCTTCA 1610
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTACACTTCAACTCTTAATGGTTTCAATTTTTGTCAACTAGATCCTTACTTCACTGGAGA 1670
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTTTCGATTATATCGTAGTTGCTTGTCTTCCTGGGATAAGCGAGGAGGTGCTGTTTCGAG 1730
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GGGCATTGATGCCTATCTTTGGACTGAACTGGATAAGTGCCTTTGTAACTAGTGCCATTT 1790
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TCGGTATTCTTCACTTGGGCAATGGCAGAAAATATTCATTTGCAATCTGGGCAACGTTTG 1850
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 TTGGCGTAGCATATGGTTTAGCTACCATAGCTTCTTCAAGCATCATAGTTCCAATGGCTT 1910
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 CTCACTCCATAAACAATATTATCGGAGGCCTAATTTGGCGCTTTACCAACAATACAGAAA 1970
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GAGAATAGGTTTCTCCTTAGTATATTTGGAAATATATATTTTCAGTTTTAGGTGTTATTT 2030
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 GTTTTTTTGCTTTAGCATAGACCTTTTAGTTTGTCTATACTGGTTGTTTTTGTAACTTGT 2090
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ACTGCTAGGATGCTTGAAGAAATGTTTTGCCTTACTGTTCTTTAAGATCATTTGGGCACG 2150
consensus_6529#1 ------------------------------------------------------------
consensus_6529#0 ATGTGTATTACAGATAACTATTTACATGTTGT 2182
consensus_6529#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||