These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1391 fasta sequence [CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGCGATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGGAGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTGGAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAGGAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGAGCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTTCTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGCCCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTCATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGTGATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGAGCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCCTGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTTA------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100600 [CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGCGATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGGAGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTGGAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAGGAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGAGCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTTCTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGCCCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTCATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGTGATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGAGCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCCTGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTT ] [-] EMBL CA760255 [ GATTGATCCTGAGGAGGAGAGGAAACTGTTGCCCAAGGAAAAGAAGGCATCCATGGAATTTTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGCCAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGNCGCCAACATAAATTTCCTAAAGTAACTACGCAAATTTTCTTTCACAAATTCCATCCACCTCTCCCAGCCTATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATTTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATGGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTA A AAAAAAAAAAAAAAAAAAA ] [+] EMBL CF302606 [ ACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTTACTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GGATATTATGCGCAAGAAGCCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACACATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAGCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA] [+] EMBL BQ908837 [GGATATTATGCGCAAGAAGCCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACACATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAGCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6530#0 CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGC 60 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGG 120 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 AGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTG 180 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAG 240 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGA 300 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTT 360 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 CTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGC 420 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 CCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTC 480 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 ATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGT 540 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGA 600 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 GCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCC 660 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 TGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCAC 720 consensus_6530#1 ------------------------------------------------------------ consensus_6530#0 CACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGA 780 consensus_6530#1 ------------------------------------GGATATTATGCGCAAGAAGCCAGA 24 ******************* **** consensus_6530#0 GGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATAC 840 consensus_6530#1 GGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATAC 84 ************************************************************ consensus_6530#0 AGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTT-CTTTCACAAATT 899 consensus_6530#1 AGATGAAGACGACA-CATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATT 143 ************** ******************************** ************ consensus_6530#0 CCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATA 959 consensus_6530#1 CCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATA 203 ******************************************** *************** consensus_6530#0 TATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCA 1019 consensus_6530#1 TATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCA 263 ************************************************************ consensus_6530#0 GAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCT 1079 consensus_6530#1 GAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCT 323 ************************************************************ consensus_6530#0 GCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTT 1139 consensus_6530#1 GCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTT 383 ************************************************************ consensus_6530#0 CCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGC 1199 consensus_6530#1 CCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGC 443 ************************************************************ consensus_6530#0 GAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAG 1259 consensus_6530#1 GAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAA-G 502 ********************************************************** * consensus_6530#0 TGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCA 1319 consensus_6530#1 TGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCA 562 ************************************************************ consensus_6530#0 AAGCTATTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1379 consensus_6530#1 A-GCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA------- 614 * *********** * ** ** ** ********** consensus_6530#0 AAAAAAAAAAAA 1391 consensus_6530#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||