These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1261 fasta sequence [CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA] [+] EMBL AK064621 [CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATG ] [+] EMBL CA767108 [ acaaggggGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAA ] [-] EMBL CB655468 [ TTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA] consensusID : consensus_6531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA] [+] EMBL CB655467 [AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6531#0 CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAG 60 consensus_6531#1 ----------------AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAG 44 *** * *********** ******************** consensus_6531#0 GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGC 120 consensus_6531#1 GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGC 104 ********************************* ************************** consensus_6531#0 GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 180 consensus_6531#1 GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 164 ************************************************************ consensus_6531#0 GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 240 consensus_6531#1 GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 224 ************************************************************ consensus_6531#0 CCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 300 consensus_6531#1 CCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 284 ******* **************************************************** consensus_6531#0 CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 360 consensus_6531#1 CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 344 ************************************************************ consensus_6531#0 TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 420 consensus_6531#1 TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 404 ************************************************************ consensus_6531#0 GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 480 consensus_6531#1 GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 464 ************************************************************ consensus_6531#0 TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 540 consensus_6531#1 TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 524 ************************************************************ consensus_6531#0 GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACG 600 consensus_6531#1 GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACG 584 **************************************** ******************* consensus_6531#0 GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACAT 660 consensus_6531#1 GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA---------- 634 ************************************************** consensus_6531#0 CAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGG 720 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 GGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGT 780 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 CAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACT 840 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 CGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAA 900 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 ATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAA 960 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 GAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATG 1020 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 TAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATAT 1080 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 TTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAG 1140 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 CAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCA 1200 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 TATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCA 1260 consensus_6531#1 ------------------------------------------------------------ consensus_6531#0 A 1261 consensus_6531#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||