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Oryza sativa
cluster # 6531 cluster # 6531       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6531#0 length = 1261 sequences # 3  
consensus_6531#1 length = 634 sequences # 1  

consensusID : consensus_6531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1261
fasta sequence
                              [CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA]

[+] EMBL AK064621             [CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATG                                                                                                                                                                                                               ]
[+] EMBL CA767108             [                                                                                                                                                                                                                                                                                                                                                                                                   acaaggggGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB655468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA]


>consensus_6531#0 CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAG GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGC GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG CCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACG GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACAT CAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGG GGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGT CAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACT CGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAA ATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAA GAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATG TAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATAT TTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAG CAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCA TATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCA A



consensusID : consensus_6531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA]

[+] EMBL CB655467             [AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA]


>consensus_6531#1 AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCC GCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCG GGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACG CTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCAC TCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTG AAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCT GAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTG GATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTG AGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTAC TCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAA TATTACAGGCCACATCATGATTACTTTTCTGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6531#0      CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAG 60
consensus_6531#1      ----------------AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAG 44
                                      ***     *   *********** ********************

consensus_6531#0      GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGC 120
consensus_6531#1      GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGC 104
                      ********************************* **************************

consensus_6531#0      GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 180
consensus_6531#1      GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 164
                      ************************************************************

consensus_6531#0      GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 240
consensus_6531#1      GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 224
                      ************************************************************

consensus_6531#0      CCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 300
consensus_6531#1      CCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 284
                      ******* ****************************************************

consensus_6531#0      CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 360
consensus_6531#1      CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 344
                      ************************************************************

consensus_6531#0      TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 420
consensus_6531#1      TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 404
                      ************************************************************

consensus_6531#0      GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 480
consensus_6531#1      GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 464
                      ************************************************************

consensus_6531#0      TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 540
consensus_6531#1      TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 524
                      ************************************************************

consensus_6531#0      GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACG 600
consensus_6531#1      GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACG 584
                      **************************************** *******************

consensus_6531#0      GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACAT 660
consensus_6531#1      GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA---------- 634
                      **************************************************          

consensus_6531#0      CAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGG 720
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      GGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGT 780
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      CAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACT 840
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      CGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAA 900
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      ATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAA 960
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      GAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATG 1020
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      TAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATAT 1080
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      TTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAG 1140
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      CAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCA 1200
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      TATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCA 1260
consensus_6531#1      ------------------------------------------------------------
                                                                                  

consensus_6531#0      A 1261
consensus_6531#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)