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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCAAGCGCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAGCGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGAAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCCGACCACTGTTCCAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACACCAGAGGAGTTGGCTGAGCTGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAATTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCCACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGGACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGCTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAATGCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCATGTGCCTGACTAATTAGTTTTGTTATTG]
[+] EMBL AK071129 [CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCAAGCGCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAGCGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGAAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCCGACCACTGTTCCAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACACCAGAGGAGTTGGCTGAGCTGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAATTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCCACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGGACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGCTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAATGCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCATGTGCCTGACTAATTAGTTTTGTTATTG]
consensusID : consensus_6532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCTGCCTAAAAAAAAAAAAAA]
[+] EMBL CA767026 [AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCT ]
[-] EMBL CA763336 [ GTGTGGTTTGTGAACCTNTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGNCCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTAGGTGCTACATCAACAAATGCAGTTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCA TTCATGTGGCTGCCTAAAAAAAAAAAAAA]
consensusID : consensus_6532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[CGGCCAAGCACCACCGCCGTCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAGCCGGTGTCCGCCGTTGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGGAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCAGACCACTGTTCAAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGCC]
[+] EMBL CF299961 [CGGCCAAGCACCACCGCCGTCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAGCCGGTGTCCGCCGTTGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGGAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCAGACCACTGTTCAAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6532#0 ------------------------------------------------------------
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGAT 60
consensus_6532#0 ------------------------------------------------------------
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 TTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTG 120
consensus_6532#0 ---------------CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCA 45
consensus_6532#2 ------------------------------------------------------CGGCCA 6
consensus_6532#1 AGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTG 180
***
consensus_6532#0 AGC-GCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAG- 103
consensus_6532#2 AGC-ACCACCGCCG-------TCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAG- 57
consensus_6532#1 AGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAA 240
*** * ** * *** * * * * * ** * * **
consensus_6532#0 ----------------CGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTT 147
consensus_6532#2 ----------------CCGGTGT-----CCGCCGTTGCCCTCCTCGAGTTCGACCCCGTT 96
consensus_6532#1 GAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCA 300
* * * * * * * * **** ** *
consensus_6532#0 CATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGA-------T 200
consensus_6532#2 CATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGA-------T 149
consensus_6532#1 AATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACAT 360
****** ** * **** * * * ***** ** * * *
consensus_6532#0 GTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTG----- 255
consensus_6532#2 GTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGG 209
consensus_6532#1 GATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGAC 420
* ** * * ** * ** ** * *** * ** ** ** *
consensus_6532#0 --GGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGA---GGTCGACGGCG 310
consensus_6532#2 TGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGA---GGTCGACGGCG 266
consensus_6532#1 AGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCA 480
* * * * * * *** * * ** * * ** *** ** * * *
consensus_6532#0 TCATGAAGGAGAAACGGTGGGTGGAGTT--CAAGGGGA--------GCGACCAGGATCCG 360
consensus_6532#2 TCATGGAGGAGAAACGGTGGGTGGAGTT--CAAGGGGA--------GCGACCAGGATCAG 316
consensus_6532#1 ACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAG 540
**** * ** ** * * ** * * * ** *** *** *
consensus_6532#0 ACCACTGTTCCAGTTGAGTGG-ATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGAC 419
consensus_6532#2 ACCACTGTTCAAGTTGAGTGG-ATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGAC 375
consensus_6532#1 CATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTT 600
* * * ** ** * * *** ** ** ** * *
consensus_6532#0 ACCAGAGGAGTTGGCTGAGC--TGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAA 477
consensus_6532#2 GCCAGAGGAGTTGGCTGAGC--TGGAAGCGAGGCGTGAACGTGCC--------------- 418
consensus_6532#1 TACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGAC 660
* * * *** * * * * * * ***
consensus_6532#0 TTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGG 537
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 AACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCTGCCTAAAAAA 720
consensus_6532#0 AAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGAT 597
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 AAAAAAAA---------------------------------------------------- 728
consensus_6532#0 CAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCC 657
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 ACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGG 717
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 ACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGC 777
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 TGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGA 837
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 AATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAAT 897
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 GCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCA 957
consensus_6532#2 ------------------------------------------------------------
consensus_6532#1 ------------------------------------------------------------
consensus_6532#0 TGTGCCTGACTAATTAGTTTTGTTATTG 985
consensus_6532#2 ----------------------------
consensus_6532#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||