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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence
[GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATCTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTGAATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTAAAACTAAGATNAACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAA-TACTTTATTTTAATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT]
[+] EMBL CB096610 [GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATCTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTGAATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTAAAACTAAGATNAACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAA TACTTTATTTTAATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT]
[+] EMBL CA766201 [GGACGGCAGACCAACTGCCTTTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATTTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGTTGAATTTAGGCCAATCGTTCCCAATATAAAGTGGAAAT GTAGTTGTTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAA TTTGATCCAT GGTTAAAACTAAGATAAACTATAATTAGACATTAAGGCTATTACTTA GTTGCTGGTCTCCAAATTACTTTATTTTAATGACTAATTTTAAT ]
consensusID : consensus_6540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[ACCATTTCGATAGCTTTCCCACTTGCACCTGAATACCTGGTAGTTCCATCGGATTATCTTGATTATTACAACTTATTCCATGCGGAAACCCCCTTAACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCAAAATACAAGCAAGAAAAGCCAAACCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGGTAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTGTTGCGGTGCTGCATCTTCTGAATTAGGTTGGATTGAACCAGCTACCCATGGAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCATTAGGTGCTACGGACGATGTGGGGATCAGCGAGGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGGCAAACTTGTAGTTTTGACTCCATTCCATCTATGTAAGCTTCACAACGAGTA]
[-] EMBL AK108796 [ACCATTTCGATAGCTTTCCCACTTGCACCTGAATACCTGGTAGTTCCATCGGATTATCTTGATTATTACAACTTATTCCATGCGGAAACCCCCTTAACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCAAAATACAAGCAAGAAAAGCCAAACCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGGTAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTGTTGCGGTGCTGCATCTTCTGAATTAGGTTGGATTGAACCAGCTACCCATGGAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCATTAGGTGCTACGGACGATGTGGGGATCAGCGAGGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGGCAAACTTGTAGTTTTGACTCCATTCCATCTATGTAAGCTTCACAACGAGTA]
consensusID : consensus_6540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[TGCCCGTGTGCCCCCCGTATGTGTATCCCAGCGTGTCTGAGCCACANTCCCACACGGTGAGTACCCGTTGTTTGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAACTTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGGAATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACGGTATTCAGGTGCAAAGTGGGAAAGCTATCGAAATGGTTGATATGCACCCATTGCTTGGTTATTTGCTAAAAGCCTTGGGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAAGGTGCAACATGAGAAAAGTATTCCAGTTTCAAAAAAAAAA]
[+] EMBL BQ908053 [TGCCCGTGTGCCCCCCGTATGTGTATCCCAGCGTGTCTGAGCCACANTCCCACACGGTGAGTACCCGTTGTTTGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAACTTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGGAATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACGGTATTCAGGTGCAAAGTGGGAAAGCTATCGAAATGGTTGATATGCACCCATTGCTTGGTTATTTGCTAAAAGCCTTGGGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAAGGTGCAACATGAGAAAAGTATTCCAGTTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6540#0 GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAG 60
consensus_6540#1 ------------------------------------------------------------
consensus_6540#2 ------------------------------------------------------------
consensus_6540#0 CGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCT 120
consensus_6540#1 ---------------------ACCATTTCGATAGCTTTCCC-ACTTGCACCTGAATACCT 38
consensus_6540#2 ---------------------------------------------TGCCCGTGTGCCCCC 15
*** * *
consensus_6540#0 TAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCAC 180
consensus_6540#1 GGTAGTTCCATCG--GATTATCTTGATTATTACAA-CTTATTCCATGCGGAAACCCCCTT 95
consensus_6540#2 CGTATGTGTATCCCAGCGTGTC-TGA--GCCACANTCCCACACGGTGAGTACCCGTTGTT 72
* ** * * *** ** * * * ** * *
consensus_6540#0 GCCGACACCATACACGG-GAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGG 239
consensus_6540#1 AACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCA-AAATACAAGCAAGAAAAG 154
consensus_6540#2 TGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAAC 132
* * * * * * * *
consensus_6540#0 TGTGA-----ATATATTGCTGCAATAGGAAGA-TAT-GTGTCAGAA-ATCAAATATAGTG 291
consensus_6540#1 CCAAA-----CCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGG 209
consensus_6540#2 TTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGG 192
** * * * * ** *
consensus_6540#0 TGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAG 351
consensus_6540#1 TAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTG-- 267
consensus_6540#2 AATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACG-GTATTCAGGTG-- 249
* * ** * * * * ****
consensus_6540#0 CTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTA 411
consensus_6540#1 ---TTGCGGTGCTGCATCTTCTGAATTAGGTTGGATT-----GAACCAGCTACCCAT--G 317
consensus_6540#2 ----CAAAGTGGGAAAGCTATCGAA--ATGGTTGATATGCACCCATTGCTTGGTTATTTG 303
* ** * * * * **
consensus_6540#0 AGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTT 471
consensus_6540#1 GAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCAT-TAGGTGCTACGGACGATGT 376
consensus_6540#2 CTAAAAGCCTTG-GGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAA--- 359
* * * * * * * * *
consensus_6540#0 AATGTTACGCAGGCCACAATTTATCAGTTG--ACTGTTGGTTCAACGCCGTACAA-TCTA 528
consensus_6540#1 GGGGATCAGCGAGG-ACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTG 435
consensus_6540#2 GGTGCAACATGAGA-AAAGTATTCCAGTTTCAAAAAAAAAA------------------- 399
* * * ** * *
consensus_6540#0 CTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTG 588
consensus_6540#1 GGACGTGCGGGAGCGAAGGGGC-ACTCAAGCGATGACTGCTACCTTTCCTT----TGCCG 490
consensus_6540#2 ------------------------------------------------------------
consensus_6540#0 AATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAAC 648
consensus_6540#1 AATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTG-----TCTCAAGC 545
consensus_6540#2 ------------------------------------------------------------
consensus_6540#0 TGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTA--AAACTAAGATN 706
consensus_6540#1 TCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCT 605
consensus_6540#2 ------------------------------------------------------------
consensus_6540#0 AACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAATACTTTATTTTA 766
consensus_6540#1 TCCTGAATTGAGGTCTCCAGGGTGTGAAT-ATATTGCTGG----CAAACTTGTAGTTTT- 659
consensus_6540#2 ------------------------------------------------------------
consensus_6540#0 ATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT 814
consensus_6540#1 --GACTCCATTCCATCTATG-TAAGCTTCACAACGAGTA--------- 695
consensus_6540#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||