These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA] [+] EMBL CB677110 [CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA] consensusID : consensus_6541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC] [-] EMBL CB666156 [AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGA ] [-] EMBL CA764411 [ TCGGTTTACANCCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGGCTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGTGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC] consensusID : consensus_6541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA] [-] EMBL BQ907931 [TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6541#0 ------------------------------------------------------------ consensus_6541#1 AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAG 60 consensus_6541#2 --------------------TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATA 40 consensus_6541#0 ------------CCCTTTTTTT-TTTTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 43 consensus_6541#1 CATGG--ACTAGTCCAAGACAA-CAGTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 113 consensus_6541#2 GCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTT 100 ** ****** ********* ******* **** **** consensus_6541#0 C--ACAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 89 consensus_6541#1 C--AGAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 159 consensus_6541#2 CCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGC 160 * *** ********** ******** ******* * ******** consensus_6541#0 AATGCC-ACTC-ATCTACACAAGAGGTG----------AAAAAATCATTGACTA---TTT 134 consensus_6541#1 AATGCC-ACTC-ATCTACACAAG-GGTG----------AAAAAATCATTGACTA---TTT 203 consensus_6541#2 AATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTT 220 ****** **** ******** * ** * * * * ***** * *** consensus_6541#0 GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 176 consensus_6541#1 GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 245 consensus_6541#2 GCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGA 280 *** *** * **** *** ** * * ** ** ** ***** consensus_6541#0 GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 234 consensus_6541#1 GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 303 consensus_6541#2 GACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAAC 340 ********************************* **** ********************* consensus_6541#0 T-GCACGCCCTAATCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 289 consensus_6541#1 T-GCACGCCCTAGTCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 358 consensus_6541#2 TTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACA 400 * * ******** ***** *********** ******* ***************** *** consensus_6541#0 AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 348 consensus_6541#1 AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 417 consensus_6541#2 AGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAAC 460 ***** **************************** ************************* consensus_6541#0 CAAATCTGAAAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 403 consensus_6541#1 CAAATCTGAGAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 472 consensus_6541#2 -AAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAG 519 ******** ***** ********* ***** ***** *** **** * * ****** consensus_6541#0 CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 463 consensus_6541#1 CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 532 consensus_6541#2 CCCAAAAA-----NAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA----- 569 ** ***** * * ** * ** ** ** ** * * * consensus_6541#0 TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 523 consensus_6541#1 TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 592 consensus_6541#2 ------------------------------------------------------------ consensus_6541#0 CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAA 583 consensus_6541#1 CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC------------------- 633 consensus_6541#2 ------------------------------------------------------------ consensus_6541#0 TCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGG 643 consensus_6541#1 ------------------------------------------------------------ consensus_6541#2 ------------------------------------------------------------ consensus_6541#0 CAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTT 703 consensus_6541#1 ------------------------------------------------------------ consensus_6541#2 ------------------------------------------------------------ consensus_6541#0 GAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCC 763 consensus_6541#1 ------------------------------------------------------------ consensus_6541#2 ------------------------------------------------------------ consensus_6541#0 ACACTAACA 772 consensus_6541#1 --------- consensus_6541#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||