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Oryza sativa
cluster # 6541 cluster # 6541       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6541#0 length = 772 sequences # 1  
consensus_6541#1 length = 633 sequences # 2  
consensus_6541#2 length = 569 sequences # 1  

consensusID : consensus_6541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence
                              [CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA]

[+] EMBL CB677110             [CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA]


>consensus_6541#0 CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGA AATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAA ATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACT CCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACG CCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCC AGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAA CATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGC AATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAA TTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTC TAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAG AACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAA CGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCT TTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA



consensusID : consensus_6541#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC]

[-] EMBL CB666156             [AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGA                                                                          ]
[-] EMBL CA764411             [                    TCGGTTTACANCCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGGCTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGTGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC]


>consensus_6541#1 AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAG CATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGA AAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAG GGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACA AAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAA AACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAG TTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAA ATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAA ACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTA AAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATA ATTAACTTCTAAAGTTAAATATTAGCGTAGTCC



consensusID : consensus_6541#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA]

[-] EMBL BQ907931             [TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA]


>consensus_6541#2 TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGAC CAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGC NCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACAC CACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCC AGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGC ACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTG TACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGC TATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAA AGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCA CATTGGGGCAACCCTCATTCTTTGNGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6541#0      ------------------------------------------------------------
consensus_6541#1      AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAG 60
consensus_6541#2      --------------------TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATA 40
                                                                                  

consensus_6541#0      ------------CCCTTTTTTT-TTTTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 43
consensus_6541#1      CATGG--ACTAGTCCAAGACAA-CAGTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 113
consensus_6541#2      GCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTT 100
                                   **           ****** ********* ******* **** ****

consensus_6541#0      C--ACAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 89
consensus_6541#1      C--AGAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 159
consensus_6541#2      CCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGC 160
                      *    *** **********      ******** *******      *   ******** 

consensus_6541#0      AATGCC-ACTC-ATCTACACAAGAGGTG----------AAAAAATCATTGACTA---TTT 134
consensus_6541#1      AATGCC-ACTC-ATCTACACAAG-GGTG----------AAAAAATCATTGACTA---TTT 203
consensus_6541#2      AATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTT 220
                      ****** **** ******** *  ** *          * * *  ***** *     ***

consensus_6541#0      GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 176
consensus_6541#1      GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 245
consensus_6541#2      GCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGA 280
                      ***      *** * ****      ***     ** *  *  **  ** **    *****

consensus_6541#0      GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 234
consensus_6541#1      GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 303
consensus_6541#2      GACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAAC 340
                      ********************************* **** *********************

consensus_6541#0      T-GCACGCCCTAATCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 289
consensus_6541#1      T-GCACGCCCTAGTCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 358
consensus_6541#2      TTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACA 400
                      * * ******** ***** *********** ******* ***************** ***

consensus_6541#0      AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 348
consensus_6541#1      AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 417
consensus_6541#2      AGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAAC 460
                      ***** **************************** *************************

consensus_6541#0      CAAATCTGAAAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 403
consensus_6541#1      CAAATCTGAGAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 472
consensus_6541#2      -AAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAG 519
                       ******** ***** ********* ***** ***** *** **** *    * ******

consensus_6541#0      CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 463
consensus_6541#1      CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 532
consensus_6541#2      CCCAAAAA-----NAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA----- 569
                      ** *****      * *  **   *  **  **  **        ** *  *  *     

consensus_6541#0      TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 523
consensus_6541#1      TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 592
consensus_6541#2      ------------------------------------------------------------
                                                                                  

consensus_6541#0      CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAA 583
consensus_6541#1      CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC------------------- 633
consensus_6541#2      ------------------------------------------------------------
                                                                                  

consensus_6541#0      TCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGG 643
consensus_6541#1      ------------------------------------------------------------
consensus_6541#2      ------------------------------------------------------------
                                                                                  

consensus_6541#0      CAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTT 703
consensus_6541#1      ------------------------------------------------------------
consensus_6541#2      ------------------------------------------------------------
                                                                                  

consensus_6541#0      GAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCC 763
consensus_6541#1      ------------------------------------------------------------
consensus_6541#2      ------------------------------------------------------------
                                                                                  

consensus_6541#0      ACACTAACA 772
consensus_6541#1      ---------
consensus_6541#2      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)