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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA]
[+] EMBL CB677110 [CCCTTTTTTTTTTTTTACCAACAAGACCACATATTCTGCATTTCACAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGAGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAATCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAAAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAATCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGGCAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTTGAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCCACACTAACA]
consensusID : consensus_6541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC]
[-] EMBL CB666156 [AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGACTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGAGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGA ]
[-] EMBL CA764411 [ TCGGTTTACANCCAGATGCGAATTGCTCAAAATTGCATAGCATGGACTAGTCCAAGACAACAGTTTACCAACAAGACCACATATTCTGCATTTCAGAAGAAAACCGTTGAAATTTATCCTCAAGAATACAGAACATGCGAATGCCACTCATCTACACAAGGGTGAAAAAATCATTGGCTATTTGCTACAAAAATTCAGAATCTCGTATCCTCTATTTACAAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTGCATGCCCTAACCATCTAAAAAAACTGCACGCCCTAGTCAATGTACTCATGTTGTCAATTGTAACTCTTGCTTGAGTACAAGTTTGTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAACCAAATCTGTGAACATGCCAAAGGCTCCTGCCAACGATGAGATTAAGAAATTTGAGCCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCATGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTACTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC]
consensusID : consensus_6541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA]
[-] EMBL BQ907931 [TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATAGCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTTCCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGCAATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTTGCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGAGACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAACTTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACAAGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAACAAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAGCCCAAAAANAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6541#0 ------------------------------------------------------------
consensus_6541#1 AACACAACCCATAGAATATATCGGTTTACAACCAGATGCGAATTGCTCAAAATTGCATAG 60
consensus_6541#2 --------------------TTTTTTTACAACCNGATGCGAATTGNTCAAAATTGCAATA 40
consensus_6541#0 ------------CCCTTTTTTT-TTTTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 43
consensus_6541#1 CATGG--ACTAGTCCAAGACAA-CAGTTTACC-AACAAGACC-ACATATT-CTGC-ATTT 113
consensus_6541#2 GCATGGCACTAGTCCAAGACCAACAGTTTACCCAACAAGACCCACATATTTCTGCCATTT 100
** ****** ********* ******* **** ****
consensus_6541#0 C--ACAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 89
consensus_6541#1 C--AGAAG-AAAACCGTTGAA----ATTTATCC-TCAAGAA-----TACAGAACATGCG- 159
consensus_6541#2 CCAGCAAGCAAAACCGTTGCNCACAATTTATCCCTCAAGAAATAACCAGGAAACATGCGC 160
* *** ********** ******** ******* * ********
consensus_6541#0 AATGCC-ACTC-ATCTACACAAGAGGTG----------AAAAAATCATTGACTA---TTT 134
consensus_6541#1 AATGCC-ACTC-ATCTACACAAG-GGTG----------AAAAAATCATTGACTA---TTT 203
consensus_6541#2 AATGCCCACTCCATCTACACCACAGGGGTTGCACGCACACACATCCATTGGCCTCATTTT 220
****** **** ******** * ** * * * * ***** * ***
consensus_6541#0 GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 176
consensus_6541#1 GCT------ACAAAAATTCAGA---ATC-----TCGTATCCTCTATTTACA----AAGGA 245
consensus_6541#2 GCTCACCACACACACATTCCAGCACATCCTCGGTCATCCCTCCTTATTTCACCACAAGGA 280
*** *** * **** *** ** * * ** ** ** *****
consensus_6541#0 GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 234
consensus_6541#1 GACTCCAACTATTACGTTGCACCAGTGGCAACT-GCAT-GCCCTAACCATCTAAAAAAAC 303
consensus_6541#2 GACTCCAACTATTACGTTGCACCAGTGGCAACTTGCATTGCCCTAACCATCTAAAAAAAC 340
********************************* **** *********************
consensus_6541#0 T-GCACGCCCTAATCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 289
consensus_6541#1 T-GCACGCCCTAGTCAAT-GTACTCATGTT-GTCAATT-GTAACTCTTGCTTGAGT-ACA 358
consensus_6541#2 TTGGACGCCCTAGTCAATTGTACTCATGTTTGTCAATTTGTAACTCTTGCTTGAGTTACA 400
* * ******** ***** *********** ******* ***************** ***
consensus_6541#0 AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 348
consensus_6541#1 AGTTT-GTACCCAGTGTTGCTATGACCAAAATTGCCTACAATACACAGTTGATAACAAAC 417
consensus_6541#2 AGTTTTGTACCCAGTGTTGCTATGACCAAAATTGGCTACAATACACAGTTGATAACAAAC 460
***** **************************** *************************
consensus_6541#0 CAAATCTGAAAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 403
consensus_6541#1 CAAATCTGAGAACAT-GCCAAAGGC-TCCTGCCAACG-ATGAGATTAA--GAAATTTGAG 472
consensus_6541#2 -AAATCTGAGAACATTGCCAAAGGCGTCCTGGCAACGCATGNGATTCACGNNATTTTGAG 519
******** ***** ********* ***** ***** *** **** * * ******
consensus_6541#0 CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 463
consensus_6541#1 CCAAAAAAACATTGAGCAATGGAACCTATCTGGAAAATGTAGGGCCTGTTTGGTAGGCCA 532
consensus_6541#2 CCCAAAAA-----NAACCTTGAGCCACATTGGGGCAACCCTCATTCTTTGNGACA----- 569
** ***** * * ** * ** ** ** ** * * *
consensus_6541#0 TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 523
consensus_6541#1 TGGCTCTAAAATCTGAATTGAAGTGGAAGTTCAAAGGAGATGACAGCTAAGTGAGTTTTA 592
consensus_6541#2 ------------------------------------------------------------
consensus_6541#0 CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCCTTATATCCAGCGGAAACAA 583
consensus_6541#1 CTAAAATAATTAACTTCTAAAGTTAAATATTAGCGTAGTCC------------------- 633
consensus_6541#2 ------------------------------------------------------------
consensus_6541#0 TCGCAAGCAATATGCAGAACACCAGAAATTCTGTCTGCATATTGTGATTGAAGAGGTTGG 643
consensus_6541#1 ------------------------------------------------------------
consensus_6541#2 ------------------------------------------------------------
consensus_6541#0 CAAAGATTATACACAAACGATTATAGCTATGAAAAACCCATCATAGGACATGGGGTATTT 703
consensus_6541#1 ------------------------------------------------------------
consensus_6541#2 ------------------------------------------------------------
consensus_6541#0 GAAAAGAAAATGAAGCTTTGGTTCTGAAACTGAACAGTTAGAAAAAGGAACTATCCCCCC 763
consensus_6541#1 ------------------------------------------------------------
consensus_6541#2 ------------------------------------------------------------
consensus_6541#0 ACACTAACA 772
consensus_6541#1 ---------
consensus_6541#2 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||