These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1111 fasta sequence [AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCCTCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGGTGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCCGGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGGCGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCGGGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAGGCGCCAAAGGAATTTGACATT-CTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGA-AGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTA-GTGGCCATCTGTCAATGTATATATATTAACTAGGCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCAGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA] [+] EMBL CB656314 [AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCCTCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGGTGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCCGGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGGCGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCGGGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACA ] [-] EMBL CB656315 [ GCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAGGCGCCAAAGGAATTTGACATT CTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGA AGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTA GTGGCCATCTGTCAATGTATATATATTAACTAGGCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCAGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA] [+] EMBL BQ907800 [ CAAGGCGCCAAAGGAATTTGACATTGCTTGCAGTACCCTGGAC AAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGATAGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTAGGTGGCCATCGGGCAAGGTATATATATTAANTAGGCTATTCTTCAGCCCAAGANTCACCNGTGCGCATCAGAAACNCTGTACATGCCGGACTCAGTAAAATAAAACAAGATTCGGAC ] consensusID : consensus_6546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTAAGTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTCCACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCTTGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATTAGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTCTGAATCCTAAATATTTCTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGATCACCAGAATAAACAATGTTCACTCGAACAACAACAAAAAAAGGCAGTTTAATTTGGTGTTTTGCTAATCTTTTGAACTGCCTAGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTTCAAGGGTCCCCAAAGGCGCCAAAGGAATTTGACATTCCTTGCAGTACCT] [+] EMBL CA752863 [CTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTAAGTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTCCACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCTTGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATTAGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTCTGAATCCTAAATATTTCTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGATCACCAGAATAAACAATGTTCACTCGAACAACAACAAAAAAAGGCAGTTTAATTTGGTGTTTTGCTAATCTTTTGAACTGCCTAGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTTCAAGGGTCCCCAAAGGCGCCAAAGGAATTTGACATTCCTTGCAGTACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6546#0 AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCC 60 consensus_6546#1 ------------------------------------------------------------ consensus_6546#0 TCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGG 120 consensus_6546#1 ------------------------------------------------------------ consensus_6546#0 TGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCC 180 consensus_6546#1 ------------------------------------------------------------ consensus_6546#0 GGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGG 240 consensus_6546#1 ------------------------------------------------------------ consensus_6546#0 CGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCG 300 consensus_6546#1 ------------------------------------------------------------ consensus_6546#0 GGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGG 360 consensus_6546#1 ------------------------------------------------------CTGTCT 6 * ** consensus_6546#0 TGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGAC---GATCTGTC-CGGG 416 consensus_6546#1 CCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGG 66 * * ** * ** * ** * * * * ** *** * ** consensus_6546#0 TTCAGGGGCCTGGTTC--TTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGC 474 consensus_6546#1 TTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATG 126 ** ** * ** * * * *** * * *** ** * * * ** * consensus_6546#0 GTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTG 534 consensus_6546#1 GATTTACTTGCCAGTAA---GTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTC 183 * * **** * ** * * * * ** **** * ** * * consensus_6546#0 TCTCCTCACCCAGTGGATCATTCTAC-ATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTG 593 consensus_6546#1 CACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCT 243 *** * ** * * * * * *** * * * *** * * consensus_6546#0 CAGGTTGTAAAGCGA-----AGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTT 648 consensus_6546#1 TGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATT 303 * * * * * * **** ** * * * * * ** * ** consensus_6546#0 ACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATG 708 consensus_6546#1 --AGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATG 361 ** *** * *** ************************************** consensus_6546#0 TCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAA 768 consensus_6546#1 TCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGT--CTGAATCCTAAA 419 ********************************************** *** ** ** ** consensus_6546#0 GATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGG 828 consensus_6546#1 TATTT--------------CTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGA-- 463 ** * * * * * ** * **** * * * * consensus_6546#0 TCCCCAAGGCGCCAAAGGAATTTGACATTCTTGCAGTACCCTTGACAAAAGCTGCATTCA 888 consensus_6546#1 TCACCAGAAT----AAACAATGTT-CACTCGAACAACAACAAAAAAAGGCAGTTTAATTT 518 ** *** ** *** * ** ** ** * * * * * * * consensus_6546#0 GGACGCTCAAGAGGAGCCAAGGGTTGCCTGAAGAATGGCTGCAATACTTGGCCAGGCCAT 948 consensus_6546#1 GG-TGTTTTGCTAATCTTTTGAACTGCCTAGG---TGACTGCA-TGCTCAA--GATGCAA 571 ** * * * ***** ** ***** * ** ** consensus_6546#0 CTCCATGAACACCAGCTCCAGAAATTAGTGGCCATCTGTCAATGTATATATATTAACTAG 1008 consensus_6546#1 CTCCAGGAA-----GGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTT-CAAG 625 ***** *** * ****** ***** * ** * * ** * * ** consensus_6546#0 GCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACA-TGCCTGACTC 1067 consensus_6546#1 GGT---------CCCCAAAGGCGCCAAAG-GAATTTGACATTCCTTGCAGTACCT----- 670 * * *** * * * ** * * ** ** * ** * ** * *** consensus_6546#0 AGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA 1111 consensus_6546#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||