cluster # 6555

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Oryza sativa
cluster # 6555 cluster # 6555 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6555#0 length = 549 sequences # 2

consensus_6555#1 length = 387 sequences # 1
consensus_6555#2 length = 278 sequences # 1

consensusID : consensus_6555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [CTCTCTCTCTCTCTCCCCTTCCTTCCCCGTGTCTTCCAGAATGTTCCCTTCCGCCACCGCGCCACGCCTCGCCCTCACCCCGCGCTCCGTCGCCGCCGCCCGCCGCGCCATGGCCTCCGCCGCCACCCCGCAGCCAAGCCCGCCCAGCCCCAAGGCGGTGCGGGTTGTGGTGAAGGGCCGGGTGCAGGGGGTCTTCTTCCGCGACTGGACGGGTGGAGACGGCGCGCGCGCTGGGCCTCGCCGGCTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCCGCCAGGGTCGACGAGATGGTGTCCCGCCACCTCCCCGTCGGCCCCCGCGCCGCCGCCGTCACCGCCGTCCTCCCCTCCCCCGCCGACCCCGTCGACCCCGCCGAGGGCTTCACCCGCAAGCCCACCGCCTGAGGAGGAAGACGACGTACTGCTTCTTGCTGTTTGATGATGCGATAAAATAATCTTCACCTCTAATCCTTACGAGTTTCACTGGGAGTGTTTGTTTCTCGATCGATGAGCGATTTGATCA]

[+] EMBL CF338471             [CTCTCTCTCTCTCTCCCCTTCCTTCCCCGTGTCTTCCAGAATGTTCCCTTCCGCCACCGCGCCACGCCTCGCCCTCACCCCGCGCTCCGTCGCCGCCGCCCGCCGCGCCATGGCCTCCGCCGCCACCCCGCAGCCAAGCCCGCCCAGCCCCAAGGCGGTGCGGGTTGTGGTGAAGGGCCGGGTGCAGGGGGTCTTCTTCCGCGACTGGACGGGTGGAGACGGCGCGCGCGCTGGGCCTCGCCGGCTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCCGCCAGGGTCGACGAGATGGTGTCCCGCCACCTCCCCGTCGGCCCCCGCGCCGCCGCCGTCACCGCCGTCCTCCCCTCCCCCGCCGACCCCGTCGACCCCGCCGAGGGCTTCACCCGCAAGCCCACCGCCTGAGGAGGAAGACGACGTACTGCTTCTTGCTGTTTGATGATGCGATAAAATAATCTTCACCTCTAATCCTTACGAGTTTCACTGGGAGTGTTTGTTTCTCGATCGATGAGCGATTTGATCA]
[+] EMBL CF338349             [CTCTCTCTCTCTCTCCCCTTCCTTCCCCGTGTCTTCCAGAATGTTCCCTTCCGCCACCGCGCCACGCCTCGCCCTCACCCCGCGCTCCGTCGCCGCCGCCCGCCGCGCCATGGCCTCCGCCGCCACCCCGCAGCCAAGCCCGCCCAGCCCCAAGGCGGTGCGGGTTGTGGTGAAAGGCCGGGTGCAGGGGGTCTTCTTC                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_6555#0
CTCTCTCTCTCTCTCCCCTTCCTTCCCCGTGTCTTCCAGAATGTTCCCTTCCGCCACCGC
GCCACGCCTCGCCCTCACCCCGCGCTCCGTCGCCGCCGCCCGCCGCGCCATGGCCTCCGC
CGCCACCCCGCAGCCAAGCCCGCCCAGCCCCAAGGCGGTGCGGGTTGTGGTGAAGGGCCG
GGTGCAGGGGGTCTTCTTCCGCGACTGGACGGGTGGAGACGGCGCGCGCGCTGGGCCTCG
CCGGCTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCCG
CCAGGGTCGACGAGATGGTGTCCCGCCACCTCCCCGTCGGCCCCCGCGCCGCCGCCGTCA
CCGCCGTCCTCCCCTCCCCCGCCGACCCCGTCGACCCCGCCGAGGGCTTCACCCGCAAGC
CCACCGCCTGAGGAGGAAGACGACGTACTGCTTCTTGCTGTTTGATGATGCGATAAAATA
ATCTTCACCTCTAATCCTTACGAGTTTCACTGGGAGTGTTTGTTTCTCGATCGATGAGCG
ATTTGATCA

consensusID : consensus_6555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [CCTCGGCCTCGCCCGGGTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCTCCCCCGCCTCCGCCGTCACCGCCGTCGTCCCCTCCCCCGCCGACCCCATCCACCCCTCCCTCGGCTTCGAGATCAACTTCACCCGTCTGATCTTCGCCGCCGCCGCCACGTCATCACGGTACAATCAATCACGAATAAAGATCCCAGAAAACCCTGATTTGTTTATCCCACTGTTAGGTTGTGATGCTAATACTAGTAGTACCCACTGTATGCTAGTGTTTCTTCATCAATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTATGCCCAATATCAAATCTTCTCTGGAATTGGCACCAAAAAAAAAA]

[+] EMBL BI802421             [CCTCGGCCTCGCCCGGGTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCTCCCCCGCCTCCGCCGTCACCGCCGTCGTCCCCTCCCCCGCCGACCCCATCCACCCCTCCCTCGGCTTCGAGATCAACTTCACCCGTCTGATCTTCGCCGCCGCCGCCACGTCATCACGGTACAATCAATCACGAATAAAGATCCCAGAAAACCCTGATTTGTTTATCCCACTGTTAGGTTGTGATGCTAATACTAGTAGTACCCACTGTATGCTAGTGTTTCTTCATCAATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTATGCCCAATATCAAATCTTCTCTGGAATTGGCACCAAAAAAAAAA]




>consensus_6555#1
CCTCGGCCTCGCCCGGGTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCT
CCGGCTCCCCCGCCTCCGCCGTCACCGCCGTCGTCCCCTCCCCCGCCGACCCCATCCACC
CCTCCCTCGGCTTCGAGATCAACTTCACCCGTCTGATCTTCGCCGCCGCCGCCACGTCAT
CACGGTACAATCAATCACGAATAAAGATCCCAGAAAACCCTGATTTGTTTATCCCACTGT
TAGGTTGTGATGCTAATACTAGTAGTACCCACTGTATGCTAGTGTTTCTTCATCAATAAT
AGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTATGCCCAATATCAAATCT
TCTCTGGAATTGGCACCAAAAAAAAAA

consensusID : consensus_6555#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [ATCGAGAGACCCCGCAACCAAATCTAGGGTTTCGCCTCCTCTCCGCAGGATGTCCGATCCCGCCCCCGCCGCCGCCGCCACGTCATCAGGTACGATCAATCACGAATAAAGATCAAGAAAACCTGATTTGTTTATCCATGTTAGGTTGTGATGCTAATACTAGTAGTACCATGTATGCTAGTGTTTCTTCATCAATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTATGCCAATATCAAATCTTCTCTGGAAAAAAAAAACAA]

[+] EMBL CF310339             [ATCGAGAGACCCCGCAACCAAATCTAGGGTTTCGCCTCCTCTCCGCAGGATGTCCGATCCCGCCCCCGCCGCCGCCGCCACGTCATCAGGTACGATCAATCACGAATAAAGATCAAGAAAACCTGATTTGTTTATCCATGTTAGGTTGTGATGCTAATACTAGTAGTACCATGTATGCTAGTGTTTCTTCATCAATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTATGCCAATATCAAATCTTCTCTGGAAAAAAAAAACAA]




>consensus_6555#2
ATCGAGAGACCCCGCAACCAAATCTAGGGTTTCGCCTCCTCTCCGCAGGATGTCCGATCC
CGCCCCCGCCGCCGCCGCCACGTCATCAGGTACGATCAATCACGAATAAAGATCAAGAAA
ACCTGATTTGTTTATCCATGTTAGGTTGTGATGCTAATACTAGTAGTACCATGTATGCTA
GTGTTTCTTCATCAATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGC
TATGCCAATATCAAATCTTCTCTGGAAAAAAAAAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6555#1      CCTCGGCCTCGCCCGGGTGGGTCCGCAACCGCCGCGACGGCACCGTGGAGGCCCTCCTCT 60
consensus_6555#2      ------------------------------------------------------------
consensus_6555#0      -------------------------------------CTCTCTCTCTCTCTCCCCTTCCT 23
                                                                                  

consensus_6555#1      CCGGCTCCCCCGCCTCCGCCGTCACCGCCGTCGTCCCCTCCCCCGCCGACCCCATCCACC 120
consensus_6555#2      --------------------------------ATCGAGAGACCCCGCAACCAAATCTAGG 28
consensus_6555#0      TCCCCGTGTCTTCCAGAATGTTCCCTTCCGCCACCGCGCCACGCCTCGCCCTCACCCCGC 83
                                                        *      * *  *  **  * *    

consensus_6555#1      CCTCCCTCGGCTTCGAGAT---CAACTTCACCCGTCTGATC--TTCGCCGCC--GCCGCC 173
consensus_6555#2      GTTTCGCCTCCTCTCCG-----CAGGATGTCCGATCCCGCC--CCCGCCGCC--GCCGCC 79
consensus_6555#0      GCTCCGTCGCCGCCGCCCGCCGCGCCATGGCCTCCGCCGCCACCCCGCAGCCAAGCCCGC 143
                        * *  *  *           *    *  **        *    *** ***  ***  *

consensus_6555#1      ACGTCATCACGGTACAATCAATCACGAATAAAGATCCCAGAAAACCCTGATTTGTTTATC 233
consensus_6555#2      ACGTCATCA-GGTACGATCAATCACGAATAAAGATC--AAGAAAACCTGATTTGTTTATC 136
consensus_6555#0      CCAGCCCCAAGGCGGTGCGGGTTGTGGTGAAGGGCC--GGGTGCAGGGGGTCTTCTTCCG 201
                       *  *  ** **         *   *   ** *  *            * * *  **   

consensus_6555#1      CCACTGTTAGGTTG----TGATGCTAATACTAGTAGT-ACCCACTGTAT--GCTAGTGTT 286
consensus_6555#2      CA--TGTTAGGTTG----TGATGCTAATACTAGTAGT-ACCA--TGTAT--GCTAGTGTT 185
consensus_6555#0      CGACTGGACGGGTGGAGACGGCGCGCGCGCTGGGCCTCGCCGGCTGGGTCCGCAACCGCC 261
                      *   **   ** **     *  **     ** *   *  **   **  *  ** *  *  

consensus_6555#1      TCTTCATCA--ATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTAT 344
consensus_6555#2      TCTTCATCA--ATAATAGTCCATCTCTATGTTGAGTTGTGAATTGTGAATTGTGGGCTAT 243
consensus_6555#0      GCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCCGCCAGGGTCGACGAGATGGTGT 321
                       *  *  **   *    * **  ****  *  **       *  **  *      * * *

consensus_6555#1      GCCC--AATATCAAATCTTCTCTGGAATTGGCACCAAAAAAAAAA--------------- 387
consensus_6555#2      GCC---AATATCAAATCTTCTCTGGAAA-------AAAAAAACAA--------------- 278
consensus_6555#0      CCCGCCACCTCCCCGTCGGCCCCCGCGCCGCCGCCGTCACCGCCGTCCTCCCCTCCCCCG 381
                       **   *    *   **  * *  *             *                     

consensus_6555#1      ------------------------------------------------------------
consensus_6555#2      ------------------------------------------------------------
consensus_6555#0      CCGACCCCGTCGACCCCGCCGAGGGCTTCACCCGCAAGCCCACCGCCTGAGGAGGAAGAC 441
                                                                                  

consensus_6555#1      ------------------------------------------------------------
consensus_6555#2      ------------------------------------------------------------
consensus_6555#0      GACGTACTGCTTCTTGCTGTTTGATGATGCGATAAAATAATCTTCACCTCTAATCCTTAC 501
                                                                                  

consensus_6555#1      ------------------------------------------------
consensus_6555#2      ------------------------------------------------
consensus_6555#0      GAGTTTCACTGGGAGTGTTTGTTTCTCGATCGATGAGCGATTTGATCA 549