cluster # 6558

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Oryza sativa
cluster # 6558 cluster # 6558 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6558#0 length = 187 sequences # 3

consensus_6558#1 length = 125 sequences # 1

consensusID : consensus_6558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 187
fasta sequence

                              [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT]

[+] EMBL CF298431             [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT]
[+] EMBL CF298358             [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACCCTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCAAATAAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT]
[-] EMBL CF298359             [                                 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAATCCAAAAACATTCAAGAACACTAAGTCAATAGTCACATACCGATTCCACTGGG ATCGAATCAATCA                                     ]




>consensus_6558#0
GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACA
TCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTC
AGCCCAT

consensusID : consensus_6558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 125
fasta sequence

                              [TCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATAACTTTTTTTTTCGTAT]

[+] EMBL CF298432             [TCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATAACTTTTTTTTTCGTAT]




>consensus_6558#1
TCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATAACTTTTTTTTT
CGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6558#0      GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_6558#1      ----------------------------TCGGTATGTGACTATTGACTTAGTGTTCTTGA 32
                                                  *   * * *   * **   **  * ** **  

consensus_6558#0      TTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACA 120
consensus_6558#1      ATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 92
                       * *****   ****    ****   *****     ***** *  **   ** *   * *

consensus_6558#0      TCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTC 180
consensus_6558#1      AAAAAACCCCTGCCATAACTTTTTTTTTCGTAT--------------------------- 125
                           *  **      **     *   **  *                            

consensus_6558#0      AGCCCAT 187
consensus_6558#1      -------