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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1204 fasta sequence
[GGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGTAATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAACCCTTCCCCGCGGCCGCCACGGATGGTACTGCACGACTCGCTCGGCGGCGCGGGGTTCTCCACCGTGCACGCCGGGGTGGCCCGACCGGGAGAGAACAAAGCAGCATGTCGGGTAGCTCACGCGGCGGGGCATGACACCAGCATCGCCATCAACCGGTGAGCGGACCTCGCACCCGCCGCGTTCTGCGTCGCCGCAGCCGATGACTAGCTTGCTCGTCTCCCAAATTCCCAATCCTGCGCCGCACCCCATCGAAGCCATCGTCGCGCCCCTCGACGACCTCTCCACCTGCTTCCTCGCCGACAGCTACCTTCTGGTTTCCACCCACCGATGCGCCGCCTGAGGTCTTCTTCAACCACGTCGACTGTTCCATCTAGATCCACATTGTACAGTACTATATATAAGCACGATTAAGAACATTTGCAACAAGCACATATACTATTTTTATAGTTTGACTTCAGATTCTGGTAGTTCGATTCCTTTATTAAATTCGGAAGGATTGCAGCAAGCACATATATTATTTGTATTGTTTCACTTCAGACTCTGTTAGTTTA]
[+] EMBL AK111378 [GGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGTAATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAACCCTTCCCCGCGGCCGCCACGGATGGTACTGCACGACTCGCTCGGCGGCGCGGGGTTCTCCACCGTGCACGCCGGGGTGGCCCGACCGGGAGAGAACAAAGCAGCATGTCGGGTAGCTCACGCGGCGGGGCATGACACCAGCATCGCCATCAACCGGTGAGCGGACCTCGCACCCGCCGCGTTCTGCGTCGCCGCAGCCGATGACTAGCTTGCTCGTCTCCCAAATTCCCAATCCTGCGCCGCACCCCATCGAAGCCATCGTCGCGCCCCTCGACGACCTCTCCACCTGCTTCCTCGCCGACAGCTACCTTCTGGTTTCCACCCACCGATGCGCCGCCTGAGGTCTTCTTCAACCACGTCGACTGTTCCATCTAGATCCACATTGTACAGTACTATATATAAGCACGATTAAGAACATTTGCAACAAGCACATATACTATTTTTATAGTTTGACTTCAGATTCTGGTAGTTCGATTCCTTTATTAAATTCGGAAGGATTGCAGCAAGCACATATATTATTTGTATTGTTTCACTTCAGACTCTGTTAGTTTA]
consensusID : consensus_6563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 649 fasta sequence
[CCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCG]
[+] EMBL CF339976 [CCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTG ]
[+] EMBL CF339859 [ AAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCG]
[+] EMBL CF338825 [ AAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6563#0 GGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGTAATGATAGGCAAT 60
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 TCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCT 120
consensus_6563#1 ------------------------CCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCT 36
************************************
consensus_6563#0 CCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGA 180
consensus_6563#1 CCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGA 96
************************************************************
consensus_6563#0 GTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCG 240
consensus_6563#1 GTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCG 156
************************************************************
consensus_6563#0 GAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAA 300
consensus_6563#1 GAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAA 216
************************************************************
consensus_6563#0 CTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCT 360
consensus_6563#1 CTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCT 276
************************************************************
consensus_6563#0 GAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATA 420
consensus_6563#1 GAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATA 336
************************************************************
consensus_6563#0 ATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTC 480
consensus_6563#1 ATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTC 396
************************************************************
consensus_6563#0 GTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGT 540
consensus_6563#1 GTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGT 456
************************************************************
consensus_6563#0 ATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACC 600
consensus_6563#1 ATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACC 516
************************************************************
consensus_6563#0 GAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAACCCTTCCC 660
consensus_6563#1 GAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAAT-CCC 575
*************************************************** * ***
consensus_6563#0 CGCGGCCGCCACGGATGGTACTGCACGACTCGCTCGGCGGCGCGGGGTTCTCCACCGTGC 720
consensus_6563#1 CGCATATCCGGTTGTCAGGTCAGGATGG-TAAGGCACCTGCTTTACACTTTCGCCCGTGG 634
*** * * * * * * * * * * ** * ** *****
consensus_6563#0 ACGCCGGGGTGGCCCGACCGGGAGAGAACAAAGCAGCATGTCGGGTAGCTCACGCGGCGG 780
consensus_6563#1 TCA--GTGATGGCTGCG------------------------------------------- 649
* * * ****
consensus_6563#0 GGCATGACACCAGCATCGCCATCAACCGGTGAGCGGACCTCGCACCCGCCGCGTTCTGCG 840
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 TCGCCGCAGCCGATGACTAGCTTGCTCGTCTCCCAAATTCCCAATCCTGCGCCGCACCCC 900
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 ATCGAAGCCATCGTCGCGCCCCTCGACGACCTCTCCACCTGCTTCCTCGCCGACAGCTAC 960
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 CTTCTGGTTTCCACCCACCGATGCGCCGCCTGAGGTCTTCTTCAACCACGTCGACTGTTC 1020
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 CATCTAGATCCACATTGTACAGTACTATATATAAGCACGATTAAGAACATTTGCAACAAG 1080
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 CACATATACTATTTTTATAGTTTGACTTCAGATTCTGGTAGTTCGATTCCTTTATTAAAT 1140
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 TCGGAAGGATTGCAGCAAGCACATATATTATTTGTATTGTTTCACTTCAGACTCTGTTAG 1200
consensus_6563#1 ------------------------------------------------------------
consensus_6563#0 TTTA 1204
consensus_6563#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||