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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6568 cluster # 6568       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6568#0 length = 848 sequences # 4  

consensusID : consensus_6568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 848
fasta sequence
                              [TTGTTAGTAGTAGTAATAAACATGGTTGAATAATGCATTTGATTGAAATTACTAGTTTTACATTTGATTACATGGAGCACCTGATTCTTCTAAACAAGCTAATGTGCTATCGGATCATCAATT-AGTTACAGCCACCGATAGCA-CCCCCTTTGAGGATCAGTGCTGCAACACTTCCTCCTCTACCATATACCCGGTAGGGTGCCTGCCTGCTCCAGAAGAGGATACACCGTCCATCAGGCATGGAAATGTTCTCCTTCTGAACCACTGAACACATGAGATTGCTTGATTCGGCATTGCTTATATCTTCTGCTTCAGTGCCTGACGCAGCTGGACCTTATGCCCGTCGAGCTTTGCCTCCAGAAGTTTGGACTTGAGGTTATGCGTGTTCTGTTTCTGCGCGCCCCGGGGCCACTCTATGCATCCTTTCATGGCACGAACCACATGAGGGTTTAGCAGGTCTGGACTCCATTCTCCGACGCTTGGTGAAACTGTGCACACTTCTCCGTTCTTCAAGCTAGGAGAAAGTGCAGCATTTGACATTCGACCGCTTGAGAGCCTGCCGTTCAGTAACTCGGATCCCGTCTTCTTATGGCCATCACCATTCGACGATCTCCACAGTCTGCCAAATGAAGACCCCTTCTTCCGGTACTTCTCTGCTGTTGTTGAACAGACTTCACTGATCTCGCTATTTGACCTGTTGTCATCCCAATCTGTTCCACTCACCGATGCATCATTTCCACCACAAAACCCATTTACCGATGGTTCGCTTCCATCCGGTGAATTGCTAGAGCCCTGCTCATCAACATGGCTGACAGTCTCCCATCCACTATCATCTTCCTCCTCATTTC]

[-] EMBL AK063878             [  GTTAGTAGTAGTAATAAACATGGTTGAATAATGCATTTGATTGAAATTACTAGTTTTACATTTGATTACATGGAGCACCTGATTCTTCTAAACAAGCTAATGTGCTATCGGATCATCAATT AGTTACAGCCACCGATAGCA CCCCCTTTGAGGATCAGTGCTGCAACACTTCCTCCTCTACCATATACCCGGTAGGGTGCCTGCCTGCTCCAGAAGAGGATACACCGTCCATCAGGCATGGAAATGTTCTCCTTCTGAACCACTGAACACATGAGATTGCTTGATTCGGCATTGCTTATATCTTCTGCTTCAGTGCCTGACGCAGCTGGACCTTATGCCCGTCGAGCTTTGCCTCCAGAAGTTTGGACTTGAGGTTATGCGTGTTCTGTTTCTGCGCGCCCCGGGGCCACTCTATGCATCCTTTCATGGCACGAACCACATGAGGGTTTAGCAGGTCTGGACTCCATTCTCCGACGCTTGGTGAAACTGTGCACACTTCTCCGTTCTTCAAGCTAGGAGAAAGTGCAGCATTTGACATTCGACCGCTTGAGAGCCTGCCGTTCAGTAACTCGGATCCCGTCTTCTTATGGCCATCACCATTCGACGATCTCCACAGTCTGCCAAATGAAGACCCCTTCTTCCGGTACTTCTCTGCTGTTGTTGAACAGACTTCACTGATCTCGCTATTTGACCTGTTGTCATCCCAATCTGTTCCACTCACCGATGCATCATTTC                                                                                                               ]
[-] EMBL BQ906842             [tttttttTAGTAGTAATAAACATGGTTGAATAATGCATTGGATTGAAATGACTAG TTTACATGTGATTACATGGAGCACCTGATTCTTCTAAACAAGCTAATGTGCTATCGGATCATCAATTCAGTTACAGGCACTG TCGCATCCCCCTTTGAGGATCAGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB679692             [                                    ATTTGATTCATA TAGTAGTTTTACATTTGATTACATGGAGCACCTGATTCTTCTAAACAAGCTAATGTGCTATCGGATCATCAATT AGTTACAGCCACCGATAGCA CCCCCTTTGAGGATCAGTGCTGCAACACTTCCTCCTCTACCATATACCCGGTAGGGTGCCTGCCTGCTCCAGAAGAGGATACACCGTCCATCAGGCATGGAAATGTTCTCCTTCTGAACCACTGAACACATGAGATTGCTTGATTCGGCATTGCTTATATCTTCTGCTTCAGTGCCTGACGCAGCTGGACCTTATGCCCGTCGAGCTTTGCCTCCAGAAGTTTGGACTTGAGGTTATGCGTGTTCTGTTTCTGCGCGCCCCGGGGCCACTCTATGCATCCTTTCATGGCACGAACCACATGAGGGTTTAGCAGGTCTGGACTCCATTCTCCGACGCTTGGTGAAACTGTGCACACTTCTCCGTTCTTCAAGCTAGGAGAAAGTGCAGCATTTGACATTCGACCGCTTGAGAGCCTGCCGTTCAGTAACTCGGATCCCGTCTTCTTATGGCCATCACCATTCGACGATCTCCACAGTCTGCCAAATGAAGACCCCTTCTTCCGGTACTTCTCTGCTGTTGTTGAACAGACTTCACTGATCTCGCTATTTGACCTGTTGTCATCCCAATCTGTTCCACTCACCGATGCATCATTTCCACCACAAAACCCATTTACCGATGGTTCGCTTCCATCCGGTGAATTGCTAGAGCCCTGCTCATCAACATGGCTGACAGTCTCCCATCCACTATCATCTTCCTCCTCATTTC]
[-] EMBL CA767107             [                                                                                                                                                                                                                                                                                                     CATCGCTTATATCTTCTGCTTCAGTGCCTGACGCAGCTGGACCTTATGCCCGTCGAGCTTTGCCTCCAGAAGTTTGGACTTGAGGTTATGCGTGTTCTGTTTCTGCGCGCCCCGGGGCCACTCTATGCATCCTTTCATGGCACGAACCACATGAGGGTTTAGCAGGTCTGGACTCCATTCTCCGACGCTTGGTGAAACTGTGCACACTTCTCCGTTCTTCAAGCTAGGAGAAAGTGCAGCATTTGACATTCGACCGCTTGAGAGCCTGCCGTTCAGTAACTCGGATCCCGTCTTCTTATGGCCATCACCATTCGACGATCTCCACAGTCTGCCAAATGAAGACCCCTTCTTCCGGTACTTCCCTGCTGTTGTTGAACAGACTTCACTGATCTCGCTATTTGACCTGTT                                                                                                                                                     ]


>consensus_6568#0 TTGTTAGTAGTAGTAATAAACATGGTTGAATAATGCATTTGATTGAAATTACTAGTTTTA CATTTGATTACATGGAGCACCTGATTCTTCTAAACAAGCTAATGTGCTATCGGATCATCA ATTAGTTACAGCCACCGATAGCACCCCCTTTGAGGATCAGTGCTGCAACACTTCCTCCTC TACCATATACCCGGTAGGGTGCCTGCCTGCTCCAGAAGAGGATACACCGTCCATCAGGCA TGGAAATGTTCTCCTTCTGAACCACTGAACACATGAGATTGCTTGATTCGGCATTGCTTA TATCTTCTGCTTCAGTGCCTGACGCAGCTGGACCTTATGCCCGTCGAGCTTTGCCTCCAG AAGTTTGGACTTGAGGTTATGCGTGTTCTGTTTCTGCGCGCCCCGGGGCCACTCTATGCA TCCTTTCATGGCACGAACCACATGAGGGTTTAGCAGGTCTGGACTCCATTCTCCGACGCT TGGTGAAACTGTGCACACTTCTCCGTTCTTCAAGCTAGGAGAAAGTGCAGCATTTGACAT TCGACCGCTTGAGAGCCTGCCGTTCAGTAACTCGGATCCCGTCTTCTTATGGCCATCACC ATTCGACGATCTCCACAGTCTGCCAAATGAAGACCCCTTCTTCCGGTACTTCTCTGCTGT TGTTGAACAGACTTCACTGATCTCGCTATTTGACCTGTTGTCATCCCAATCTGTTCCACT CACCGATGCATCATTTCCACCACAAAACCCATTTACCGATGGTTCGCTTCCATCCGGTGA ATTGCTAGAGCCCTGCTCATCAACATGGCTGACAGTCTCCCATCCACTATCATCTTCCTC CTCATTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)