These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1926 fasta sequence [GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTACGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGGCGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCGTCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTGCCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCGGCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGGGCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCGCCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGGGCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACATGCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTACCAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTATTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAATATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCACCATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTTTAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATTGTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCTTAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA-CCA-TCGTA-CCAGATTT-CCTAAT-GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC-AAGTGGATTC-TTCCAAC-TTCCTAATAGCCTTCCAAACA-TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA-CTGCAGGGG-TTTTA-CA-AGAATGAGTTCTTAGGTTTA-GTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGA-AAGTTA-TTGCTGAG-TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG-TAGATCTTGCAG-TACTTTGTGGTATGATTATGACCTATAGACTATTGT-TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA-TTTAGGTGCAACACTA-AATGCATTCATGGCATAGAGAACCT-TT-GCGCCCCCTCGT-GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG-CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTCTAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAAGAGACTAAATC] [+] EMBL AK065634 [GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTACGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGGCGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCGTCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTGCCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCGGCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGGGCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCGCCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGGGCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACATGCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTACCAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTATTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAATATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCACCATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTTTAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATTGTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCTTAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA CCA TCGTA CCAGATTT CCTAAT GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC AAGTGGATTC TTCCAAC TTCCTAATAGCCTTCCAAACA TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA CTGCAGGGG TTTTA CA AGAATGAGTTCTTAGGTTTA GTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGA AAGTTA TTGCTGAG TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG TAGATCTTGCAG TACTTTGTGGTATGATTATGACCTATAGACTATTGT TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA TTTAGGTGCAACACTA AATGCATTCATGGCATAGAGAACCT TT GCGCCCCCTCGT GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTCTAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAAGAGACTAAATC] [-] EMBL CB657393 [ CAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA CCA TCGTA CCAGATTT CTTAAT GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC AAGTGGATTC TTCCAAC TTCCTAATAGCCTTCCAAACA TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA CTGCAGGGG TTTTA CA AGAATGAGTTCTTAGGTTTA GTACTCACCCTTGAAGGACCCATACCAGTTAGTGGCGAGA AAGTTA TTGCTGAG TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG TAGATCTTGCAG TACTTTGTGGTATGATTATGCCCTATAGACTATTGT TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA TTTAGGTGCAACACTA AATGCATTCATGGCATAGAGACCCT TT GCGCCCCCTCGT GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCT ] [+] EMBL BQ906642 [ gAGCAACCCATTCGTACCCAGATTTCCCTAATGGGGGATCATAACAGGTGCTGGTATACAAGGTATCATGATGCTCACAAAGTGGATTCGTTCCAACGTTCCTAATAGCCTTCCAAACACTAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCACCTGCAGGGGCTTTTACCACAGAATGAGTTCTTAGGTTTACGTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGANAAGTTACTTGCTGAGCTTATTTCAAGTGGAAACAGGTCATTCAAAATGGGCTGGATCTTCCAGCTACTTTGTGGTATGATTATGACCTATAGACTATTGTCTTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACACTTTAGGTGCAACACTATAATGCATTCATGGCATAGAGAACCTGTTGGCGCCCCCTCGTGGATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAGCCGAG AAAAAATGTAGTATTGTATTTATATTACTCCATATAAGTATGTGACTATATNGTGAACAaaaa ] consensusID : consensus_6570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGCGTACGTGACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGGCCATCTACTACTCGGCACAGATCCAGCTGCCAGACACCATGACTATGGCAGAGAAGTTGCGGCGCGCCGATGAAACGGTGAGGGAGATGGGACTCACCGGCACGCTGGACACTCGGATCGGCGGGCGGTCAAGCAAGGGCATCAGCGGTGGGCAACAAAAGCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCTGCTGTTCCTCGACGAACCCACCAGCGGCCTCGACAGCGCCGCCTCCTTCCATGTCATGAGTCGCATCATAGGCCTCGCTGCCAGGGAGGGCATGACAGTCGTCGCTGTCGTGCACCAGCCATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAACACCATCTTCTTTGGCCCAGCTTCAATGGCTGCCGAGTTCTTTGCTTCAAATGGCTACCCTTGCCCTCCAATGAGGAATCCATCAGATCATTTTTTGAGGACTGTGAACAAAGATTTTGACAAGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACA] [+] EMBL CB657392 [AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGCGTACGTGACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGGCCATCTACTACTCGGCACAGATCCAGCTGCCAGACACCATGACTATGGCAGAGAAGTTGCGGCGCGCCGATGAAACGGTGAGGGAGATGGGACTCACCGGCACGCTGGACACTCGGATCGGCGGGCGGTCAAGCAAGGGCATCAGCGGTGGGCAACAAAAGCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCTGCTGTTCCTCGACGAACCCACCAGCGGCCTCGACAGCGCCGCCTCCTTCCATGTCATGAGTCGCATCATAGGCCTCGCTGCCAGGGAGGGCATGACAGTCGTCGCTGTCGTGCACCAGCCATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAACACCATCTTCTTTGGCCCAGCTTCAATGGCTGCCGAGTTCTTTGCTTCAAATGGCTACCCTTGCCCTCCAATGAGGAATCCATCAGATCATTTTTTGAGGACTGTGAACAAAGATTTTGACAAGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6570#0 GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTA 60 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 CGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGG 120 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 CGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCG 180 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTG 240 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 CCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCG 300 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGG 360 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCG 420 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 CCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGG 480 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAA 540 consensus_6570#1 ------------------AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAA 42 ****************************************** consensus_6570#0 ACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAA 600 consensus_6570#1 ACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAA 102 ************************************************************ consensus_6570#0 CCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCA--GATGAAGCAATAGA 658 consensus_6570#1 CCTCGGCGTACGTG---ACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGG 159 ****** * * * ** * * *** * * ** * ** ** consensus_6570#0 CATTTTGGTGAATTCATACAAATCC---TCCAACACTTCGGAAGTCGCAAAACAGGACAT 715 consensus_6570#1 CCATCTACT-ACTCGGCACAGATCCAGCTGCCAGACACCATGACT-ATGGCAGAGAAGTT 217 * * * * * * *** **** * * * ** * * * * ** * * consensus_6570#0 GCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTAC 775 consensus_6570#1 GCGGCGCGCCGATGAAACGGTGAGGGAGA----TGGGACTCACCGGCACGCT-------- 265 *** * * * ** * ** *** ** *** * **** * * consensus_6570#0 CAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTA 835 consensus_6570#1 --GGACACTCGGA-TCGGCGGGCGGTCAAGCAAGGGCAT---CAGCGGTGGGCAACAAAA 319 ****** * * * * ** *** *** ** * * * * * consensus_6570#0 TTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAA 895 consensus_6570#1 GCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCT--GC-TGTTCCTCGACGA 376 ***** * ** * ** * ** * * ** * * ** ** * * ** * consensus_6570#0 TATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCAC 955 consensus_6570#1 ACCCACCAGCGGCCTCGA--CAGCGCCGCCT---CCTTCCATGTCA----TGAGTCGCAT 427 * ** *** ** * ** * ** **** * * * * *** consensus_6570#0 CATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTT 1015 consensus_6570#1 CATA--GGCCTCGCTGCCAG--GGAGGG--CATGACAGTCGTCGCTGTCGTGCACCAGCC 481 *** *** ** ** ****** * * **** * * ** * consensus_6570#0 TAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATT 1075 consensus_6570#1 ATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAA--CACC 539 **** ** * * * *** * * * * * ** ** consensus_6570#0 GTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCT 1135 consensus_6570#1 ATCTTCTTTGGCCCAGCTTCAA-TGGCTGCCGAGTTCTTTGCTTCAAATG---GCTACCC 595 ** ** * * **** * **** * ** * *** ** ** * consensus_6570#0 TAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATG 1195 consensus_6570#1 T--TGCCCTCCAATGAGGAATCCATCA----GATCATTTTTTG--AGGACT------GTG 641 * ** * * *** * *** * ** * ***** * ** *** ** consensus_6570#0 CACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAACCATCGTACCAGATTTCCTAAT 1255 consensus_6570#1 AACAAAGATTTTGACAAGGAGAGTGAAGACAG-----ACTCCGGTGC-----------AT 685 **** * * ** * * *** ** * ** ** * ** consensus_6570#0 GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCACAAGTGGATTCTTCCA 1315 consensus_6570#1 GCCAGCTGTTGCAGATGAAGCAATA---GACATTTTGGTGAATTCATACAAATCCT-CCA 741 * * *** ** * *** * *** ** ** ** ** ** *** consensus_6570#0 ACTTCCTAATAGCCTTCCAAACATAGTATGGAAGTACCCAATGTACTACATCTCCTTTCA 1375 consensus_6570#1 ACACTTCGGAAGTCG-CAAAACAGGACA-------------------------------- 768 ** ** * * ***** * consensus_6570#0 CAAGTATGCACTGCAGGGGTTTTACAAGAATGAGTTCTTAGGTTTAGTACTCAACCTTGA 1435 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 AGGACCCATAACAGTTAGTGGCGAGAAAGTTATTGCTGAGTTATTTCAAGTGGAAACAGG 1495 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TCATTCAAAATGGGTAGATCTTGCAGTACTTTGTGGTATGATTATGACCTATAGACTATT 1555 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GTTTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACATT 1615 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TAGGTGCAACACTAAATGCATTCATGGCATAGAGAACCTTTGCGCCCCCTCGTGATTCTT 1675 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAGCGAGAA 1735 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 AAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGA 1795 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTC 1855 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAA 1915 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GAGACTAAATC 1926 consensus_6570#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||