These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCGGCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAGGTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTC-TTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCTACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGGAGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC] [+] EMBL AK108619 [GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCGGCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAGGTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTC TTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCTACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGGAGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC] [+] EMBL CK085038 [ CTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGAT ] consensusID : consensus_6572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAAAAA] [+] EMBL AU066183 [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAAAAA] [+] EMBL AU161821 [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6572#0 GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCG 60 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 GCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAG 120 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 GTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAG 180 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 GCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTG 240 consensus_6572#1 -------------------------------TGCTGGAGGAGGCCTTGGCCATGGCGGTG 29 ***************************** consensus_6572#0 GACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCG 300 consensus_6572#1 GACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCG 89 ************************************************************ consensus_6572#0 TTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTG 360 consensus_6572#1 TTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTG 149 ***************************************** ****************** consensus_6572#0 GCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCT 420 consensus_6572#1 GCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCT 209 ************************************************************ consensus_6572#0 TTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTT 480 consensus_6572#1 TTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAA 269 ************************************************* consensus_6572#0 GTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGA 540 consensus_6572#1 AAAAA------------------------------------------------------- 274 * consensus_6572#0 ACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCT 600 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 ACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGG 660 consensus_6572#1 ------------------------------------------------------------ consensus_6572#0 AGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC 695 consensus_6572#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||